STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3207Putative cobalamin biosynthesis protein CbiM; IMG reference gene:2512956720; PFAM: Cobalt uptake substrate-specific transmembrane region. (205 aa)    
Predicted Functional Partners:
cbiQ
ABC cobalt transporter, inner membrane subunit, CbiQ; IMG reference gene:2512956722; PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.
 
 0.999
cbiO
ABC cobalt transporter, ATPase subunit, CbiO; IMG reference gene:2512956723; PFAM: ABC transporter.
 
 0.997
RSP_6168
ABC Cobalt transporter, periplasmic binding protein CbiN; IMG reference gene:2512956719; PFAM: Nickel uptake substrate-specific transmembrane region.
  
 0.996
RSP_3208
Putative CbiL protein; IMG reference gene:2512956721.
 
    0.971
RSP_2174
Putative ABC transporter, inner membrane subunit; IMG reference gene:2512954097; PFAM: Cobalt transport protein.
  
 
 0.906
cobK
precorrin-6A reductase; IMG reference gene:2512954785; PFAM: Precorrin-6x reductase CbiJ/CobK; TIGRFAM: precorrin-6x reductase.
  
  
 0.820
RSP_2175
ABC transporter, ATPase subunit; IMG reference gene:2512954098; PFAM: ABC transporter.
 
 
 0.787
cobE
Putative precorrin methylase; IMG reference gene:2512954787; PFAM: Cobalamin synthesis G C-terminus.
  
  
 0.662
cobL
Putative Precorrin-6y C5,15-methyltransferase; IMG reference gene:2512954786; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit.
  
  
 0.620
RSP_3433
Transcriptionalregulator, CopG family; IMG reference gene:2512956944; PFAM: Ribbon-helix-helix protein, copG family; NikR C terminal nickel binding domain; TIGRFAM: nickel-responsive transcriptional regulator NikR.
 
  
 0.604
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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