STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3208Putative CbiL protein; IMG reference gene:2512956721. (197 aa)    
Predicted Functional Partners:
RSP_6168
ABC Cobalt transporter, periplasmic binding protein CbiN; IMG reference gene:2512956719; PFAM: Nickel uptake substrate-specific transmembrane region.
 
  
  0.995
RSP_3207
Putative cobalamin biosynthesis protein CbiM; IMG reference gene:2512956720; PFAM: Cobalt uptake substrate-specific transmembrane region.
 
    0.971
cbiQ
ABC cobalt transporter, inner membrane subunit, CbiQ; IMG reference gene:2512956722; PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.
 
    0.959
cbiO
ABC cobalt transporter, ATPase subunit, CbiO; IMG reference gene:2512956723; PFAM: ABC transporter.
 
    0.950
RSP_3433
Transcriptionalregulator, CopG family; IMG reference gene:2512956944; PFAM: Ribbon-helix-helix protein, copG family; NikR C terminal nickel binding domain; TIGRFAM: nickel-responsive transcriptional regulator NikR.
 
    0.592
nrdR
Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
    
   0.539
RSP_0463
IMG reference gene:2512955474; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
   
    0.457
YbaB
DNA-binding protein, YbaB/EbfC family; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
   
    0.457
RSP_3488
Hypothetical protein; IMG reference gene:2512956998; PFAM: Uncharacterized protein conserved in bacteria (DUF2094); TIGRFAM: type VI secretion-associated protein, BMA_A0400 family; truncated by 6 aa.
  
    0.453
RSP_3204
Putative Oxidoreductase; IMG reference gene:2512956716; PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain.
  
    0.422
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.