Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RSP_3232ABC peptide transporter, inner membrane subunit; IMG reference gene:2512956743; PFAM: Binding-protein-dependent transport system inner membrane component. (335 aa)    
Predicted Functional Partners:
RSP_3233
ABC peptide transporter, inner membrane subunit; IMG reference gene:2512956744; PFAM: Binding-protein-dependent transport system inner membrane component.
  0.997
RSP_3235
ABC peptide transporter, ATPase subunit; IMG reference gene:2512956745; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; Belongs to the ABC transporter superfamily.
 
 0.994
RSP_3236
ABC peptide transporter, ATPase subunit; IMG reference gene:2512956746; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region.
 
 0.994
RSP_3231
ABC peptide transporter, periplasmic binding protein; IMG reference gene:2512956742; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
 
 0.993
RSP_3250
ABC peptide transporter, inner membrane subunit; IMG reference gene:2512956757; PFAM: Binding-protein-dependent transport system inner membrane component.
   0.906
RSP_3031
ABC peptide/opine transporter, inner membrane subunit; IMG reference gene:2512956530; PFAM: Binding-protein-dependent transport system inner membrane component.
   0.895
DppC
ABC dipeptide transporter, inner membrane subunit DppC; IMG reference gene:2512955834; PFAM: Binding-protein-dependent transport system inner membrane component.
   0.890
RSP_3258
ABC peptide transporter, inner membrane subunit; IMG reference gene:2512956763; PFAM: Binding-protein-dependent transport system inner membrane component.
   0.881
RSP_1453
ABC peptide/nickel/opine transporter, inner membrane subunit; IMG reference gene:2512953344; PFAM: Binding-protein-dependent transport system inner membrane component.
   0.877
RSP_3522
ABC peptide transporter, inner membrane subunit; IMG reference gene:2512957034; PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.866
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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