STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3338ABC spermidine/putrescine transporter, ATPase subunit; IMG reference gene:2512956847; PFAM: ABC transporter; TOBE domain. (325 aa)    
Predicted Functional Partners:
RSP_3337
ABC spermidine/putrescine transporter, periplasmic binding protein; IMG reference gene:2512956846; PFAM: TAT (twin-arginine translocation) pathway signal sequence.
 
 
 0.995
RSP_3336
ABC spermidine/putrescine transporter, inner membrane subunit; IMG reference gene:2512956845; PFAM: Binding-protein-dependent transport system inner membrane component.
 0.991
RSP_3335
ABC spermidine/putrescine transporter, inner membrane subunit; IMG reference gene:2512956844; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 
 0.990
cysT
ABC sulfate/thiosulfate transporter, inner membrane subunit CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
    0.907
DppD
IMG reference gene:2512955833; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region.
 
     
0.894
RSP_3373
ABC efflux transporter, inner membrane subunit; IMG reference gene:2512956884; PFAM: Predicted permease.
 
 
    0.878
RSP_3744
Amino acid ABC transporter membrane protein, PAAT family; IMG reference gene:2512957276; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.
 
 
 
  0.801
RSP_3339
Transcriptional regulator, GntR family; IMG reference gene:2512956848; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
    0.799
cysW
ABC sulfate/thiosulfate transporter, inner membrane subunit CysW; IMG reference gene:2512957235; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: sulfate ABC transporter, permease protein CysW; sulfate ABC transporter, permease protein.
 
    0.767
RSP_3334
HyuE hydantoin racemase; IMG reference gene:2512956843; PFAM: Asp/Glu/Hydantoin racemase; extended by 13 aa.
 
    0.724
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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