STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3372TRAP-T family transporter, periplasmic binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (379 aa)    
Predicted Functional Partners:
RSP_3371
TRAP-T family transporter, small (4 TMs) inner membrane subunit; IMG reference gene:2512956882; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
 
    0.934
RSP_3370
TRAP-T family transporter, DctM (12 TMs) subunit; IMG reference gene:2512956881; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
 
  
 0.901
RSP_0099
TRAP-T family sorbitol/mannitol transporter, DctQ (4TMs) subunit; IMG reference gene:2512955090; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
 
    0.796
RSP_6094
TRAP-T family sorbitol/mannitol transporter, DctM (12TMs) subunit; IMG reference gene:2512955089; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
 
  
 0.756
RSP_3369
Asp-tRNA Asn/Glu-tRNA Gln amidotransferase subunit A; IMG reference gene:2512956880; PFAM: Amidase.
 
    0.743
RSP_3168
ABC transporter, periplasmic binding protein; IMG reference gene:2512956678; PFAM: NMT1/THI5 like.
  
  
 0.687
RSP_1420
TRAP-T family transporter, periplasmic binding protein; IMG reference gene:2512957355; PFAM: Tripartite tricarboxylate transporter family receptor.
   
  
 0.677
RSP_0577
IMG reference gene:2512955592; TIGRFAM: putative solute:sodium symporter small subunit; extended by 7 aa.
   
  
 0.658
RSP_3169
FAA-hydrolase-family protein; IMG reference gene:2512956679; PFAM: Fumarylacetoacetate (FAA) hydrolase family.
   
  
 0.649
RSP_2583
PQQ-dependent catabolism-associated beta-propeller protein; IMG reference gene:2512954526; PFAM: 3-carboxy-cis,cis-muconate lactonizing enzyme; TIGRFAM: PQQ-dependent catabolism-associated beta-propeller protein; 40-residue YVTN family beta-propeller repeat; extended by 8 aa.
   
    0.623
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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