STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3373ABC efflux transporter, inner membrane subunit; IMG reference gene:2512956884; PFAM: Predicted permease. (401 aa)    
Predicted Functional Partners:
RSP_3374
ABC efflux transporter, ATPase subunit; IMG reference gene:2512956885; PFAM: ABC transporter; extended by 22 aa.
 
 0.999
LolD
ABC lipoprotein efflux transporter, ATPase subunit, LolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 0.988
RSP_1542
ABC transporter, ATPase subunit; IMG reference gene:2512953436; PFAM: ABC transporter.
 
 0.987
RSP_3375
Membrane fusion protein, HlyD family; IMG reference gene:2512956886; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.978
RSP_3602
ABC efflux transporter, ATPase subunit; IMG reference gene:2512957115; PFAM: ABC transporter.
     0.930
RSP_0733
Cell division ATP-binding protein FtsE; IMG reference gene:2512955756; PFAM: ABC transporter.
   
 0.920
RSP_3745
Amino acid ABC transporter ATP-binding protein, PAAT family; IMG reference gene:2512957277; PFAM: ABC transporter.
 
 
    0.905
RSP_0349
ABC transporter, ATPase subunit; IMG reference gene:2512955359; PFAM: ABC transporter; TOBE domain.
 
 
    0.903
RSP_0371
Amino acid ABC transporter ATP-binding protein, PAAT family; IMG reference gene:2512955381; PFAM: ABC transporter.
 
 
    0.901
DppF
ABC dipeptide transporter, ATPase subunit DppF; IMG reference gene:2512955832; PFAM: ABC transporter.
 
 
    0.901
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.