STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3386TRAP-T family transporter, periplasmic binding protein; IMG reference gene:2512956897; PFAM: Tripartite tricarboxylate transporter family receptor. (318 aa)    
Predicted Functional Partners:
RSP_3387
TRAP-T family transporter, fused small and large inner membrane subunits; IMG reference gene:2512956898; PFAM: Tripartite tricarboxylate transporter TctA family; Tripartite tricarboxylate transporter TctB family.
 
  
 0.974
RSP_1418
TRAP-T family transporter, large (12 TMs) inner membrane subunit; IMG reference gene:2512957353; PFAM: Tripartite tricarboxylate transporter TctA family.
 
  
 0.896
RSP_3409
TRAP-T family transporter, large (12 TMs) inner membrane subunit; IMG reference gene:2512956919; PFAM: Tripartite tricarboxylate transporter TctA family.
 
  
 0.896
RSP_1419
TRAP-T family transporter, small (4 TMs) inner membrane subunit; IMG reference gene:2512957354; PFAM: Tripartite tricarboxylate transporter TctB family.
  
  
 0.802
RSP_3388
IMG reference gene:2512956899; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: tartrate dehydrogenase.
 
    0.762
RSP_3389
IMG reference gene:2512956900; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: tartrate dehydrogenase.
 
     0.754
RSP_3384
IMG reference gene:2512956895; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain.
 
    0.669
RSP_3385
Transcriptional regulator, LysR family; IMG reference gene:2512956896; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.
 
    0.532
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.