STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3392IMG reference gene:2512956903; PFAM: Periplasmic binding protein. (334 aa)    
Predicted Functional Partners:
RSP_3391
ABC Fe3+-siderophores transporter, inner membrane subunit; IMG reference gene:2512956902; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.998
RSP_3390
ABC Fe3+-siderophores transporter, ATPase subunit; IMG reference gene:2512956901; PFAM: ABC transporter.
 
 
 0.988
RSP_3415
ABC Fe+3-siderophore transporter, inner membrane subunit; IMG reference gene:2512956925; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.854
RSP_1438
ABC Fe+3 hydroxamate (ferrichrome) transporter, fused inner membrane subunits; IMG reference gene:2512953329; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.839
RSP_3413
ABC Fe+3-siderophore transporter, ATPase subunit; IMG reference gene:2512956923; PFAM: ABC transporter.
 
 
 0.838
RSP_2404
ABC cobalamin/Fe3+-siderophore transporter, inner membrane subunit; IMG reference gene:2512954348; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.819
RSP_1437
ABC Fe+3 hydroxamate (ferrichrome) transporter, ATPase subunit; IMG reference gene:2512953328; PFAM: ABC transporter.
 
 
 0.814
RSP_2405
ABC cobalamin/Fe3+-siderophore transporter, ATPase subunit; IMG reference gene:2512954349; PFAM: ABC transporter.
  
 
 0.792
RSP_0581
Putative heme iron utilization protein; IMG reference gene:2512955596; PFAM: Pyridoxamine 5'-phosphate oxidase.
  
    0.531
cobL
Putative Precorrin-6y C5,15-methyltransferase; IMG reference gene:2512954786; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit.
 
  
 0.517
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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