STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3398IMG reference gene:2512956908; PFAM: Demethylmenaquinone methyltransferase. (217 aa)    
Predicted Functional Partners:
RSP_3399
IMG reference gene:2512956909; PFAM: Carbon-nitrogen hydrolase.
  
    0.790
RSP_3397
ABC opine/polyamine transporter, periplasmic binding protein; IMG reference gene:2512956907; PFAM: Bacterial extracellular solute-binding protein.
 
    0.770
RSP_3393
ABC opine/polyamine transporter, inner membrane subunit; IMG reference gene:2512956904; PFAM: Binding-protein-dependent transport system inner membrane component.
 
     0.648
RSP_3396
ABC opine/polyamine transporter, ATPase subunit; IMG reference gene:2512956906; PFAM: ABC transporter; TOBE domain.
  
    0.573
RSP_3395
ABC opine/polyamine transporter, inner membrane subunit; IMG reference gene:2512956905; PFAM: Binding-protein-dependent transport system inner membrane component.
       0.568
RSP_3400
Transcriptional regulator, LysR family; IMG reference gene:2512956910; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.
       0.542
acsF
Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family.
   
    0.457
RSP_2429
Kef-type potassium/proton antiporter, CPA2 family; IMG reference gene:2512954372; PFAM: TrkA-N domain; Sodium/hydrogen exchanger family; TIGRFAM: transporter, monovalent cation:proton antiporter-2 (CPA2) family; truncated by 20 aa; TC 2.A.37.1.
   
    0.457
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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