STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3411TRAP-T family transporter, small (4 TMs) inner membrane subunit; IMG reference gene:2512956921; PFAM: Tripartite tricarboxylate transporter TctB family. (146 aa)    
Predicted Functional Partners:
RSP_1419
TRAP-T family transporter, small (4 TMs) inner membrane subunit; IMG reference gene:2512957354; PFAM: Tripartite tricarboxylate transporter TctB family.
     
  0.900
RSP_3410
TRAP-T family transporter, periplasmic binding protein; IMG reference gene:2512956920; PFAM: Tripartite tricarboxylate transporter family receptor.
  
    0.665
RSP_3409
TRAP-T family transporter, large (12 TMs) inner membrane subunit; IMG reference gene:2512956919; PFAM: Tripartite tricarboxylate transporter TctA family.
  
    0.546
dapA-2
IMG reference gene:2512956918; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase; Belongs to the DapA family.
  
    0.514
serA
IMG reference gene:2512956917; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.
       0.513
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; IMG reference gene:2512956916; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
       0.468
RSP_3412
IMG reference gene:2512956922; PFAM: Iron-containing alcohol dehydrogenase; truncated by 19 aa.
  
    0.424
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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