STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3453IMG reference gene:2512956964; PFAM: Bacterial extracellular solute-binding protein, family 7. (327 aa)    
Predicted Functional Partners:
RSP_3451
TRAP-T family transporter, large (12TMs) inner membrane subunit; IMG reference gene:2512956962; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
 
  
 0.906
RSP_3452
TRAP-T family transporter, small (4TMs) inner membrane subunit; IMG reference gene:2512956963; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
 
    0.894
RSP_2320
IMG reference gene:2512954254; PFAM: Bacterial extracellular solute-binding protein, family 7.
   
  
 0.845
dctM
TRAP-T family C4-dicarboxylate transporter, DctM (12TMs) subunit; IMG reference gene:2512955944; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
 
  
 0.841
dctQ
TRAP-T family C4-dicarboxylate transporter, DctQ (4TMs) subunit; IMG reference gene:2512955943; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
  
  
 0.762
RSP_0634
TRAP-T family transporter, DctM (12 TMs) subunit; IMG reference gene:2512955653; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
 
  
 0.748
RSP_0484
TRAP-T family transporter, DctM (12 TMs) subunit; IMG reference gene:2512955496; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
 
  
 0.733
RSP_3662
TRAP-T family transporter, large (12TMs) inner membrane subunit; IMG reference gene:2512957197; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
 
  
 0.728
RSP_1602
TRAP-T family transporter, DctM (12TMs) subunit; IMG reference gene:2512953501; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
 
  
 0.715
RSP_0485
TRAP-T family transporter, DctQ (4 TMs) subunit; IMG reference gene:2512955497; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
 
  
 0.644
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.