STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3455D-alanine aminotransferase; IMG reference gene:2512956966; PFAM: Aminotransferase class IV; TIGRFAM: D-amino acid aminotransferase. (285 aa)    
Predicted Functional Partners:
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.942
aatA
Aspartate aminotransferase; IMG reference gene:2512955793; PFAM: Aminotransferase class I and II.
  
 
 0.929
RSP_3439
Aspartate aminotransferase; IMG reference gene:2512956950; PFAM: Aminotransferase class I and II.
  
 
 0.929
hisC
IMG reference gene:2512954218; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
 
 0.926
RSP_1984
IMG reference gene:2512953900; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; truncated by 14 aa.
   
 
 0.916
ddlA
D-alanine--D-alanine ligase; Cell wall formation.
   
 
 0.910
TyrB
Aromatic amino acid aminotransferase apoenzyme; IMG reference gene:2512955918; PFAM: Aminotransferase class I and II.
   
 
 0.909
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 0.907
RSP_1768
IMG reference gene:2512953673; PFAM: Aminotransferase class IV; TIGRFAM: D-amino acid aminotransferase.
  
 
 
0.903
dadA1
D-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids; Belongs to the DadA oxidoreductase family.
     
 0.900
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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