STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3464Transcriptional regulator, LysR-family; IMG reference gene:2512956975; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family. (309 aa)    
Predicted Functional Partners:
RSP_3463
Putative hydantoin racemase; IMG reference gene:2512956974; PFAM: Asp/Glu/Hydantoin racemase.
 
    0.882
RSP_3461
N-carbamyl-D-amino acid amidohydrolase; IMG reference gene:2512956972; PFAM: Carbon-nitrogen hydrolase.
 
    0.869
RSP_3462
Dihydropyrimidinase; IMG reference gene:2512956973; PFAM: Amidohydrolase family; TIGRFAM: D-hydantoinase.
 
    0.816
RSP_3465
Putative protein of DIM6/NTAB family; IMG reference gene:2512956976; PFAM: Flavin reductase like domain.
 
    0.813
RSP_3400
Transcriptional regulator, LysR family; IMG reference gene:2512956910; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.
  
    0.754
RSP_3459
Amino acid ABC transporter membrane protein 1, PAAT family; IMG reference gene:2512956970; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.
 
    0.728
RSP_3457
Amino acid ABC transporter substrate-binding protein, PAAT family; IMG reference gene:2512956968; PFAM: Bacterial extracellular solute-binding proteins, family 3.
 
    0.723
RSP_3460
Amino acid ABC transporter membrane protein 2, PAAT family; IMG reference gene:2512956971; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.
 
    0.707
RSP_3385
Transcriptional regulator, LysR family; IMG reference gene:2512956896; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.651
RSP_1890
Transcriptional regulator, LysR family; IMG reference gene:2512953799; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; truncated 11 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.647
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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