STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3494OmpA/MotB domain protein; IMG reference gene:2512957003; PFAM: OmpA family. (254 aa)    
Predicted Functional Partners:
RSP_3486
Putative outer membrane protein, OmpA family; IMG reference gene:2512956996; PFAM: OmpA family; Uncharacterized protein conserved in bacteria (DUF2077); TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein.
 
 
 0.765
RSP_3490
Hypothetical protein; IMG reference gene:2512957000; PFAM: Protein of unknown function (DUF1215); Intracellular multiplication and human macrophage-killing.
 
  
 0.727
tolB
Translocation protein TolB precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.697
RSP_3489
Rhs element Vgr protein; IMG reference gene:2512956999; PFAM: Phage-related baseplate assembly protein; TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein.
 
     0.605
RSP_3491
Hypothetical protein; IMG reference gene:2512957001.
  
    0.551
RSP_3492
Protein phosphatase 2C; IMG reference gene:2512957002; PFAM: Protein phosphatase 2C.
  
    0.546
RSP_0926
OmpA/MotB family protein; IMG reference gene:2512955958; PFAM: OmpA family.
  
     0.544
pal
OmpA/MotB family protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
    0.532
motB
Flagellar MotB protein; IMG reference gene:2512955236; PFAM: OmpA family.
  
 
 0.494
RSP_0765
SAM-dependent methyltransferase; IMG reference gene:2512955795.
   
  
 0.464
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.