STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3499Short chain dehydrogenase; IMG reference gene:2512957011; PFAM: Class II Aldolase and Adducin N-terminal domain. (413 aa)    
Predicted Functional Partners:
smoS
Sorbitol dehydrogenase; IMG reference gene:2512955085; PFAM: short chain dehydrogenase.
 
 
    0.900
RSP_3037
Putative short-chain dehydrogenase/reductase; IMG reference gene:2512956536; PFAM: short chain dehydrogenase.
 
 
    0.891
RSP_3500
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; IMG reference gene:2512957012.
 
    0.827
RSP_2371
3-oxoacyl-(acyl-carrier protein) reductase / Short-chain dehydrogenase/reductase SDR; IMG reference gene:2512954311; PFAM: short chain dehydrogenase.
 
      0.714
RSP_3506
Putative sugar kinase, EGGY family protein; IMG reference gene:2512957017; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain.
 
  
 0.631
RSP_3502
Monosaccharide ABC transporter membrane protein, CUT2 family; IMG reference gene:2512957014; PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.624
RSP_3501
Monosaccharide ABC transporter membrane protein, CUT2 family; IMG reference gene:2512957013; PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
     0.601
RSP_3507
Hypothetical protein; IMG reference gene:2512957018; PFAM: Antibiotic biosynthesis monooxygenase.
 
    0.597
RSP_3505
Transcriptional regulator, DeoR family; IMG reference gene:2512957016; PFAM: Sigma-70, region 4; Putative sugar-binding domain.
 
    0.588
RSP_3671
D-tagatose 3-epimerase; IMG reference gene:2512957205; PFAM: Xylose isomerase-like TIM barrel.
  
    0.552
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.