STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
expE1IMG reference gene:2512957020; PFAM: Hemolysin-type calcium-binding repeat (2 copies); TIGRFAM: type 1 secretion C-terminal target domain (VC_A0849 subclass). (202 aa)    
Predicted Functional Partners:
RSP_0230
Neutral zinc metallopeptidase; IMG reference gene:2512955234; PFAM: Matrixin; Peptidase M10 serralysin C terminal.
 
    
0.924
RSP_2930
Hypothetical protein; IMG reference gene:2512954892.
 
 
 0.908
RSP_1120
IMG reference gene:2512956164; PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family.
 
  
 0.794
RSP_1119
ABC protein exporter, fused ATPase and inner membrane subunits; IMG reference gene:2512956163; PFAM: ABC transporter; TIGRFAM: type I secretion system ABC transporter, PrtD family.
 
 
 0.771
RSP_0893
IMG reference gene:2512955925; PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family.
 
  
 0.756
RSP_0892
ABC protein toxin exporter, fused ATPase and inner membrane domain protein; IMG reference gene:2512955924; PFAM: ABC transporter transmembrane region; ABC transporter; TIGRFAM: type I secretion system ABC transporter, PrtD family.
 
 
 0.753
sitC
ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC; IMG reference gene:2512955938; PFAM: ABC 3 transport family.
   
  
 0.711
RSP_0850
Hypothetical protein; IMG reference gene:2512955880; PFAM: VIT family; Rubrerythrin.
   
  
 0.665
sitB
ABC Mn+2/Fe+2 transporter, ATPase subunit SitB; IMG reference gene:2512955937; PFAM: ABC transporter.
   
  
 0.665
sitA
ABC Mn+2/Fe+2 transporter, periplasmic substrate-binding protein SitA; IMG reference gene:2512955936; PFAM: Periplasmic solute binding protein family; Belongs to the bacterial solute-binding protein 9 family.
   
  
 0.625
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.