STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3529Putative TIM-barrel fold metal-dependent hydrolase; IMG reference gene:2512957041; PFAM: Amidohydrolase. (287 aa)    
Predicted Functional Partners:
RSP_3532
AMP-binding enzyme; IMG reference gene:2512957043; PFAM: AMP-binding enzyme.
 
  
 0.823
RSP_3530
Oxidoreductase; IMG reference gene:2512957042; PFAM: FAD dependent oxidoreductase.
  
    0.788
RSP_3533
IMG reference gene:2512957044; PFAM: Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
  
  
 0.627
RSP_3528
Transcriptional regulator, TetR family; IMG reference gene:2512957040; PFAM: Bacterial regulatory proteins, tetR family.
       0.563
RSP_3534
IMG reference gene:2512957045; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
    0.562
kynU
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
  
  
 0.445
RSP_3259
Transcription antitermination protein; IMG reference gene:2512956764; PFAM: ANTAR domain.
   
    0.437
lctB
Lactate dehydrogenase; IMG reference gene:2512955858; PFAM: FMN-dependent dehydrogenase.
  
    0.419
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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