Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RSP_3552Hypothetical protein; IMG reference gene:2512957062; PFAM: SlyX. (66 aa)    
Predicted Functional Partners:
RSP_3550
ATP phosphoribosyltransferase regulatory subunit; IMG reference gene:2512957060.
 
     0.754
RSP_1011
Hypothetical protein; IMG reference gene:2512956048.
  
     0.710
hisG
ATP phosphoribosyltransferase catalytic subunit; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity (By similarity); Belongs to the ATP phosphoribosyltransferase family. Short subfamily.
       0.688
hisS
histidyl-tRNA synthetase; IMG reference gene:2512957061; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase.
       0.688
RSP_6009
Hypothetical protein; IMG reference gene:2512953497.
  
     0.684
RSP_0915
Hypothetical protein; IMG reference gene:2512955947; PFAM: Uncharacterized protein conserved in bacteria (DUF2125).
  
     0.671
RSP_1809
Putative membrane protein; IMG reference gene:2512953716; PFAM: Rhomboid family; extended by 114 aa; old pseudo, frameshift corrected.
  
     0.654
RSP_1775
Hypothetical protein; IMG reference gene:2512953681.
  
     0.605
RSP_0707
IMG reference gene:2512955728; PFAM: Polyketide cyclase / dehydrase and lipid transport.
  
     0.603
RSP_0870
Hypothetical protein; IMG reference gene:2512955903.
  
     0.595
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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