STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3650Periplasmic serine protease (ClpP class); IMG reference gene:2512957186; PFAM: Peptidase family S49. (305 aa)    
Predicted Functional Partners:
RSP_3652
Putative phage phi-C31 gp36 major capsid-like protein; IMG reference gene:2512957188; PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family.
 
     0.689
RSP_1645
Putative phage-related protein; IMG reference gene:2512953545; PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family.
 
    0.680
RSP_3785
Putative bacteriophage-related protein; IMG reference gene:2512957309.
 
    0.564
RSP_3783
IMG reference gene:2512957312; PFAM: Phage portal protein, lambda family; TIGRFAM: phage portal protein, lambda family.
 
    0.536
RSP_2059
Putative phage tail tape measure protein; IMG reference gene:2512953974.
 
    0.517
RSP_1636
Phage-related protein, putative phage tail tape measure protein, lambda family; IMG reference gene:2512953535.
 
    0.514
RSP_1648
Phage portal protein, HK97 family; IMG reference gene:2512953548; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family.
 
    0.452
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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