STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3705D-ribulokinase; IMG reference gene:2512957241; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: FGGY-family pentulose kinase. (544 aa)    
Predicted Functional Partners:
RSP_3704
Ribitol 2-dehydrogenase; IMG reference gene:2512957240; PFAM: short chain dehydrogenase.
 
 
 0.989
cbbE
Pentose-5-phosphate-3-epimerase; IMG reference gene:2512954740; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
   
 0.950
cbbI
Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
  0.800
RSP_3701
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; IMG reference gene:2512957237; PFAM: family.
 
    0.746
RSP_3703
ABC sugar transporter, inner membrane subunit; IMG reference gene:2512957239; PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.731
RSP_3702
Monosaccharide ABC transporter ATP-binding protein, CUT2 family; IMG reference gene:2512957238; PFAM: ABC transporter.
 
    0.705
RSP_3700
Transcriptional regulator, LacI family; IMG reference gene:2512957236; PFAM: Bacterial regulatory proteins, lacI family; family.
 
  
 0.668
RSP_0476
IMG reference gene:2512955487; PFAM: Class II Aldolase and Adducin N-terminal domain.
  
  
 0.580
fucA
L-fuculose phosphate aldolase (Class II); IMG reference gene:2512954305; PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase.
  
  
 0.580
xylB
Xylulose kinase; IMG reference gene:2512956222; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: D-xylulose kinase.
  
0.548
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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