STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3721Glycosyltransferase; IMG reference gene:2512957256; PFAM: Glycosyl transferases group 1. (383 aa)    
Predicted Functional Partners:
sqdD
Glycosyl transferase (sulfolipid biosynthesis) protein; IMG reference gene:2512954511; PFAM: Glycosyl transferase family 8; extended by 18 aa.
   
 0.774
RSP_0621
Putative DNA helicase; IMG reference gene:2512955637; PFAM: Helicase conserved C-terminal domain; UvrD/REP helicase; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family.
    
 
 0.649
glgB1
1,4-alpha-glucan branching enzyme (Glycogen branching enzyme); Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.637
RSP_2450
Maltooligosyl trehalose hydrolase; IMG reference gene:2512954393; PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; Domain of unknown function (DUF3459); TIGRFAM: malto-oligosyltrehalose trehalohydrolase.
   
 0.637
RSP_3719
Polysaccharide export transporter, PST Family; IMG reference gene:2512957254; PFAM: Polysaccharide biosynthesis protein; extended by 54 aa.
 
  
 0.635
RSP_3325
Polysaccharide export transporter, PST Family; IMG reference gene:2512956833; PFAM: Polysaccharide biosynthesis protein.
 
  
 0.633
exoP
Putative succinoglycan biosynthesis transport protein ExoP; IMG reference gene:2512954505; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family; exopolysaccharide transport protein family; extended by 18 aa.
 
  
 0.566
exoU
IMG reference gene:2512954496; PFAM: Glycosyl transferase family 2.
 
 
 0.562
RSP_1447
Putative glucosamine--fructose-6-phosphate aminotransferase (isomerizing); IMG reference gene:2512953338; PFAM: SIS domain.
  
  
 0.523
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.509
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.