STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3805Putative integrase; IMG reference gene:2512957342; PFAM: Phage integrase family; Belongs to the 'phage' integrase family. (332 aa)    
Predicted Functional Partners:
RSP_3792
Hypothetical protein; IMG reference gene:2512957340.
 
    0.619
RSP_2990
Hypothetical protein; IMG reference gene:2512954958; extended by 52 aa.
 
  
 0.501
RSP_3781
IMG reference gene:2512957314; PFAM: Phage terminase large subunit (GpA).
 
  
 0.497
RSP_1300
PAP2 family phosphatase; IMG reference gene:2512956345; PFAM: PAP2 superfamily.
  
    0.464
comF
Competence protein F; IMG reference gene:2512956239; PFAM: Phosphoribosyl transferase domain.
   
    0.463
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.456
RSP_2080
Putative Tyrosine recombinase; IMG reference gene:2512954002; PFAM: Phage integrase family.
  
    0.441
RSP_1662
Integrase/recombinase; IMG reference gene:2512953565; PFAM: Phage integrase family; extended by 14 aa.
  
    0.417
RSP_6215
IMG reference gene:2512954219; PFAM: Prephenate dehydrogenase.
  
    0.404
RSP_1299
Putative binding domain protein; IMG reference gene:2512956344.
  
    0.403
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.