STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_6044Putative Serine/alanine racemase VanTc3; IMG reference gene:2512954264; PFAM: Acyltransferase family. (318 aa)    
Predicted Functional Partners:
exoP
Putative succinoglycan biosynthesis transport protein ExoP; IMG reference gene:2512954505; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family; exopolysaccharide transport protein family; extended by 18 aa.
     
 0.501
RSP_3161
Hypothetical protein; IMG reference gene:2512956670; PFAM: Uncharacterized conserved protein (DUF2156).
     
 0.433
RSP_2185
Nuclease (SNase-like); IMG reference gene:2512954108; PFAM: Staphylococcal nuclease homologue; truncated by 12 aa.
   
  
 0.426
RSP_6001
IMG reference gene:2512953351; PFAM: Peptidase inhibitor I78 family.
  
     0.418
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.