STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_6218Putative conserved small protein containing a coiled-coil domain; IMG reference gene:2512953467; PFAM: Protein of unknown function (DUF465). (72 aa)    
Predicted Functional Partners:
purK
5-(carboxyamino)imidazole ribonucleotide synthase; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).
       0.617
purE
5-(carboxyamino)imidazole ribonucleotide mutase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.617
RSP_3363
Hypothetical protein; IMG reference gene:2512956872; PFAM: Family of unknown function (DUF1790).
  
     0.581
RSP_1572
Heat shock protein, Hsp20 family; IMG reference gene:2512953468; PFAM: Hsp20/alpha crystallin family; truncated by 9 aa; Belongs to the small heat shock protein (HSP20) family.
       0.562
RSP_1573
Putative small protein; IMG reference gene:2512953469; PFAM: Protein of unknown function (DUF1150).
       0.562
rpmJ
Ribosomal protein L36; IMG reference gene:2512956445; PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type; Belongs to the bacterial ribosomal protein bL36 family.
 
     0.457
RSP_1568
Glutamate--putrescine ligase; IMG reference gene:2512953463; PFAM: Glutamine synthetase, catalytic domain.
       0.428
RSP_1569
Glutamate-1-semialdehyde 2,1-aminomutase; IMG reference gene:2512953464; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.428
RSP_2135
Hypothetical protein; IMG reference gene:2512954059.
  
     0.423
bpt
arginyl-tRNA-protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.
  
     0.417
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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