STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_6227Hypothetical protein; IMG reference gene:2512955428. (119 aa)    
Predicted Functional Partners:
RSP_0414
Putative integral membrane protein; IMG reference gene:2512955427.
 
     0.950
RSP_0415
RNA polymerase, sigma subunit, ECF family; IMG reference gene:2512955429; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.876
RSP_0416
Putative calcium-binding EF-hand domain protein; IMG reference gene:2512955430.
 
     0.687
RSP_0786
IMG reference gene:2512955813; PFAM: Endonuclease/Exonuclease/phosphatase family.
  
     0.626
RSP_1938
Hypothetical protein; IMG reference gene:2512953851; truncated by 17 aa.
  
     0.571
RSP_0557
Putative conserved small protein; IMG reference gene:2512955571; PFAM: Domain of unknown function (DUF1127).
  
     0.545
dksA
Transcriptional regulator, TraR/DksA family; IMG reference gene:2512955164; PFAM: Prokaryotic dksA/traR C4-type zinc finger.
  
     0.524
RSP_6127
Hypothetical protein; IMG reference gene:2512955764.
  
     0.523
RSP_6052
Hypothetical protein; IMG reference gene:2512954373.
  
     0.498
RSP_0418
Hypothetical protein; IMG reference gene:2512955431; PFAM: Protein of unknown function (DUF983).
       0.493
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.