STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_7549Putative transcriptional regulator; IMG reference gene:2512955215; PFAM: Prophage CP4-57 regulatory protein (AlpA); new gene. (65 aa)    
Predicted Functional Partners:
RSP_0215
Plasmid and phage replicative helicase; IMG reference gene:2512955212.
       0.807
RSP_0216
Hypothetical protein; IMG reference gene:2512955214.
       0.773
RSP_7548
Hypothetical protein; IMG reference gene:2512955213; new gene.
       0.773
int
Putative phage-related integrase; IMG reference gene:2512955217; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
     
 0.590
RSP_6102
Hypothetical protein; IMG reference gene:2512955216; extended by 9 aa.
       0.559
RSP_0207
Hypothetical protein; IMG reference gene:2512955205.
  
    0.502
RSP_0212
HNH nuclease; IMG reference gene:2512955209; PFAM: HNH endonuclease.
     
 0.500
RSP_0209
Putative prophage Lp3 protein 18; IMG reference gene:2512955207; PFAM: Caudovirus prohead protease; TIGRFAM: phage prohead protease, HK97 family.
       0.488
RSP_0211
IMG reference gene:2512955208; PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family; extended by 34 aa.
       0.484
RSP_0213
Phage terminase-like protein large subunit; IMG reference gene:2512955210; PFAM: Phage Terminase; extended by 6 aa.
       0.481
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.