Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RSP_0460 | RSP_0461 | AcrB/AcrD/AcrF family cation/multidrug efflux pump; IMG reference gene:2512955471; PFAM: AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. | Multidrug/cation efflux pump, membrane fusion protein (MFP) family; IMG reference gene:2512955472; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | 0.980 |
RSP_0460 | RSP_7559 | AcrB/AcrD/AcrF family cation/multidrug efflux pump; IMG reference gene:2512955471; PFAM: AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. | Hypothetical protein; IMG reference gene:2512955470; new gene. | 0.485 |
RSP_0461 | RSP_0460 | Multidrug/cation efflux pump, membrane fusion protein (MFP) family; IMG reference gene:2512955472; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | AcrB/AcrD/AcrF family cation/multidrug efflux pump; IMG reference gene:2512955471; PFAM: AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. | 0.980 |
RSP_0461 | RSP_7559 | Multidrug/cation efflux pump, membrane fusion protein (MFP) family; IMG reference gene:2512955472; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | Hypothetical protein; IMG reference gene:2512955470; new gene. | 0.485 |
RSP_7559 | RSP_0460 | Hypothetical protein; IMG reference gene:2512955470; new gene. | AcrB/AcrD/AcrF family cation/multidrug efflux pump; IMG reference gene:2512955471; PFAM: AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. | 0.485 |
RSP_7559 | RSP_0461 | Hypothetical protein; IMG reference gene:2512955470; new gene. | Multidrug/cation efflux pump, membrane fusion protein (MFP) family; IMG reference gene:2512955472; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | 0.485 |