node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RP131 | RP641 | gene:17555214 | gene:17555718 | 30S RIBOSOMAL PROTEIN S7 (rpsG); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 50S RIBOSOMAL PROTEIN L30 (rpmD). | 0.999 |
RP131 | RP643 | gene:17555214 | gene:17555720 | 30S RIBOSOMAL PROTEIN S7 (rpsG); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 50S RIBOSOMAL PROTEIN L18 (rplR); This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
RP131 | RP645 | gene:17555214 | gene:17555722 | 30S RIBOSOMAL PROTEIN S7 (rpsG); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 30S RIBOSOMAL PROTEIN S8 (rpsH); One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
RP131 | RP649 | gene:17555214 | gene:17555726 | 30S RIBOSOMAL PROTEIN S7 (rpsG); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 50S RIBOSOMAL PROTEIN L14 (rplN); Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
RP131 | RP650 | gene:17555214 | gene:17555727 | 30S RIBOSOMAL PROTEIN S7 (rpsG); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 30S RIBOSOMAL PROTEIN S17 (rpsQ); One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.999 |
RP131 | RP651 | gene:17555214 | gene:17555728 | 30S RIBOSOMAL PROTEIN S7 (rpsG); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 50S RIBOSOMAL PROTEIN L29 (rpmC); Belongs to the universal ribosomal protein uL29 family. | 0.999 |
RP131 | RP653 | gene:17555214 | gene:17555730 | 30S RIBOSOMAL PROTEIN S7 (rpsG); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 30S RIBOSOMAL PROTEIN S3 (rpsC); Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
RP131 | RP657 | gene:17555214 | gene:17555734 | 30S RIBOSOMAL PROTEIN S7 (rpsG); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 50S RIBOSOMAL PROTEIN L23 (rplW); One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
RP131 | RP659 | gene:17555214 | gene:17555736 | 30S RIBOSOMAL PROTEIN S7 (rpsG); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 50S RIBOSOMAL PROTEIN L3 (rplC); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.999 |
RP131 | RP824 | gene:17555214 | gene:17555893 | 30S RIBOSOMAL PROTEIN S7 (rpsG); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | METHIONINE AMINOPEPTIDASE (map); Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.992 |
RP641 | RP131 | gene:17555718 | gene:17555214 | 50S RIBOSOMAL PROTEIN L30 (rpmD). | 30S RIBOSOMAL PROTEIN S7 (rpsG); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
RP641 | RP643 | gene:17555718 | gene:17555720 | 50S RIBOSOMAL PROTEIN L30 (rpmD). | 50S RIBOSOMAL PROTEIN L18 (rplR); This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
RP641 | RP645 | gene:17555718 | gene:17555722 | 50S RIBOSOMAL PROTEIN L30 (rpmD). | 30S RIBOSOMAL PROTEIN S8 (rpsH); One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
RP641 | RP649 | gene:17555718 | gene:17555726 | 50S RIBOSOMAL PROTEIN L30 (rpmD). | 50S RIBOSOMAL PROTEIN L14 (rplN); Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
RP641 | RP650 | gene:17555718 | gene:17555727 | 50S RIBOSOMAL PROTEIN L30 (rpmD). | 30S RIBOSOMAL PROTEIN S17 (rpsQ); One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.999 |
RP641 | RP651 | gene:17555718 | gene:17555728 | 50S RIBOSOMAL PROTEIN L30 (rpmD). | 50S RIBOSOMAL PROTEIN L29 (rpmC); Belongs to the universal ribosomal protein uL29 family. | 0.999 |
RP641 | RP653 | gene:17555718 | gene:17555730 | 50S RIBOSOMAL PROTEIN L30 (rpmD). | 30S RIBOSOMAL PROTEIN S3 (rpsC); Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
RP641 | RP657 | gene:17555718 | gene:17555734 | 50S RIBOSOMAL PROTEIN L30 (rpmD). | 50S RIBOSOMAL PROTEIN L23 (rplW); One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
RP641 | RP659 | gene:17555718 | gene:17555736 | 50S RIBOSOMAL PROTEIN L30 (rpmD). | 50S RIBOSOMAL PROTEIN L3 (rplC); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.999 |
RP641 | RP824 | gene:17555718 | gene:17555893 | 50S RIBOSOMAL PROTEIN L30 (rpmD). | METHIONINE AMINOPEPTIDASE (map); Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.986 |