Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RP071 | RP229 | gene:17555154 | gene:17555310 | TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR). | HISTIDINE KINASE SENSOR PROTEIN (barA). | 0.954 |
RP071 | RP562 | gene:17555154 | gene:17555642 | TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR). | NITROGEN ASSIMILATION REGULATORY PROTEIN NTRX (ntrX); Member of the two-component regulatory system RP562/RP614. | 0.426 |
RP071 | RP614 | gene:17555154 | gene:17555693 | TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR). | NITROGEN REGULATION PROTEIN NTRY (ntrY); Member of the two-component regulatory system RP614/RP562. | 0.790 |
RP229 | RP071 | gene:17555310 | gene:17555154 | HISTIDINE KINASE SENSOR PROTEIN (barA). | TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR). | 0.954 |
RP229 | RP427 | gene:17555310 | gene:17555507 | HISTIDINE KINASE SENSOR PROTEIN (barA). | PETR PROTEIN (ompR). | 0.968 |
RP229 | RP562 | gene:17555310 | gene:17555642 | HISTIDINE KINASE SENSOR PROTEIN (barA). | NITROGEN ASSIMILATION REGULATORY PROTEIN NTRX (ntrX); Member of the two-component regulatory system RP562/RP614. | 0.768 |
RP229 | RP614 | gene:17555310 | gene:17555693 | HISTIDINE KINASE SENSOR PROTEIN (barA). | NITROGEN REGULATION PROTEIN NTRY (ntrY); Member of the two-component regulatory system RP614/RP562. | 0.442 |
RP397 | RP614 | gene:17555477 | gene:17555693 | THIOL:DISULFIDE INTERCHANGE PROTEIN TLPA (tlpA). | NITROGEN REGULATION PROTEIN NTRY (ntrY); Member of the two-component regulatory system RP614/RP562. | 0.468 |
RP427 | RP229 | gene:17555507 | gene:17555310 | PETR PROTEIN (ompR). | HISTIDINE KINASE SENSOR PROTEIN (barA). | 0.968 |
RP427 | RP562 | gene:17555507 | gene:17555642 | PETR PROTEIN (ompR). | NITROGEN ASSIMILATION REGULATORY PROTEIN NTRX (ntrX); Member of the two-component regulatory system RP562/RP614. | 0.414 |
RP427 | RP614 | gene:17555507 | gene:17555693 | PETR PROTEIN (ompR). | NITROGEN REGULATION PROTEIN NTRY (ntrY); Member of the two-component regulatory system RP614/RP562. | 0.799 |
RP562 | RP071 | gene:17555642 | gene:17555154 | NITROGEN ASSIMILATION REGULATORY PROTEIN NTRX (ntrX); Member of the two-component regulatory system RP562/RP614. | TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR). | 0.426 |
RP562 | RP229 | gene:17555642 | gene:17555310 | NITROGEN ASSIMILATION REGULATORY PROTEIN NTRX (ntrX); Member of the two-component regulatory system RP562/RP614. | HISTIDINE KINASE SENSOR PROTEIN (barA). | 0.768 |
RP562 | RP427 | gene:17555642 | gene:17555507 | NITROGEN ASSIMILATION REGULATORY PROTEIN NTRX (ntrX); Member of the two-component regulatory system RP562/RP614. | PETR PROTEIN (ompR). | 0.414 |
RP562 | RP614 | gene:17555642 | gene:17555693 | NITROGEN ASSIMILATION REGULATORY PROTEIN NTRX (ntrX); Member of the two-component regulatory system RP562/RP614. | NITROGEN REGULATION PROTEIN NTRY (ntrY); Member of the two-component regulatory system RP614/RP562. | 0.987 |
RP614 | RP071 | gene:17555693 | gene:17555154 | NITROGEN REGULATION PROTEIN NTRY (ntrY); Member of the two-component regulatory system RP614/RP562. | TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR). | 0.790 |
RP614 | RP229 | gene:17555693 | gene:17555310 | NITROGEN REGULATION PROTEIN NTRY (ntrY); Member of the two-component regulatory system RP614/RP562. | HISTIDINE KINASE SENSOR PROTEIN (barA). | 0.442 |
RP614 | RP397 | gene:17555693 | gene:17555477 | NITROGEN REGULATION PROTEIN NTRY (ntrY); Member of the two-component regulatory system RP614/RP562. | THIOL:DISULFIDE INTERCHANGE PROTEIN TLPA (tlpA). | 0.468 |
RP614 | RP427 | gene:17555693 | gene:17555507 | NITROGEN REGULATION PROTEIN NTRY (ntrY); Member of the two-component regulatory system RP614/RP562. | PETR PROTEIN (ompR). | 0.799 |
RP614 | RP562 | gene:17555693 | gene:17555642 | NITROGEN REGULATION PROTEIN NTRY (ntrY); Member of the two-component regulatory system RP614/RP562. | NITROGEN ASSIMILATION REGULATORY PROTEIN NTRX (ntrX); Member of the two-component regulatory system RP562/RP614. | 0.987 |
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