Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALA97905.1 | ALA97906.1 | SKUN_001019 | SKUN_001020 | Hypothetical protein. | Putative SAM-dependent methyltransferase. | 0.887 |
ALA97905.1 | dnaG | SKUN_001019 | SKUN_001022 | Hypothetical protein. | Putative DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.834 |
ALA97905.1 | glyS | SKUN_001019 | SKUN_001023 | Hypothetical protein. | glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.732 |
ALA97905.1 | recO | SKUN_001019 | SKUN_001024 | Hypothetical protein. | DNA repair protein recO. | 0.618 |
ALA97905.1 | rpoD | SKUN_001019 | SKUN_001021 | Hypothetical protein. | RNA polymerase sigma factor RpoD; Belongs to the sigma-70 factor family. | 0.811 |
ALA97906.1 | ALA97905.1 | SKUN_001020 | SKUN_001019 | Putative SAM-dependent methyltransferase. | Hypothetical protein. | 0.887 |
ALA97906.1 | dnaG | SKUN_001020 | SKUN_001022 | Putative SAM-dependent methyltransferase. | Putative DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.795 |
ALA97906.1 | glyS | SKUN_001020 | SKUN_001023 | Putative SAM-dependent methyltransferase. | glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.732 |
ALA97906.1 | recO | SKUN_001020 | SKUN_001024 | Putative SAM-dependent methyltransferase. | DNA repair protein recO. | 0.618 |
ALA97906.1 | rpoD | SKUN_001020 | SKUN_001021 | Putative SAM-dependent methyltransferase. | RNA polymerase sigma factor RpoD; Belongs to the sigma-70 factor family. | 0.796 |
dnaG | ALA97905.1 | SKUN_001022 | SKUN_001019 | Putative DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Hypothetical protein. | 0.834 |
dnaG | ALA97906.1 | SKUN_001022 | SKUN_001020 | Putative DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Putative SAM-dependent methyltransferase. | 0.795 |
dnaG | dnaX | SKUN_001022 | SKUN_007 | Putative DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA polymerase III gamma/tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.608 |
dnaG | glyS | SKUN_001022 | SKUN_001023 | Putative DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.770 |
dnaG | recO | SKUN_001022 | SKUN_001024 | Putative DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA repair protein recO. | 0.676 |
dnaG | rpoD | SKUN_001022 | SKUN_001021 | Putative DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | RNA polymerase sigma factor RpoD; Belongs to the sigma-70 factor family. | 0.964 |
dnaG | topA | SKUN_001022 | SKUN_00220 | Putative DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.539 |
dnaK | dnaX | SKUN_001384 | SKUN_007 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | DNA polymerase III gamma/tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.616 |
dnaK | recO | SKUN_001384 | SKUN_001024 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | DNA repair protein recO. | 0.662 |
dnaK | recU | SKUN_001384 | SKUN_00449 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Holliday junction-specific endonuclease; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation. Belongs to the RecU family. | 0.490 |
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