node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SSO0731 | SSO0939 | SSO0731 | SSO0939 | Hypothetical protein; Probably involved in the biogenesis of the ribosome. | Pre mRNA splicing protein; Regulation, RNA modification. | 0.881 |
SSO0731 | SSO2373 | SSO0731 | SSO2373 | Hypothetical protein; Probably involved in the biogenesis of the ribosome. | Conserved hypothetical protein; MJ0443. | 0.887 |
SSO0731 | csl4 | SSO0731 | SSO0292 | Hypothetical protein; Probably involved in the biogenesis of the ribosome. | Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. | 0.745 |
SSO0731 | nep1 | SSO0731 | SSO2226 | Hypothetical protein; Probably involved in the biogenesis of the ribosome. | Conserved hypothetical protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | 0.632 |
SSO0731 | rph | SSO0731 | SSO0735 | Hypothetical protein; Probably involved in the biogenesis of the ribosome. | Ribonuclease PH (rph); Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3'->5' exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails. Binds RNA. Belongs to the RNase PH family. Rrp41 subfamily. | 0.925 |
SSO0731 | rps4AB | SSO0731 | SSO0073 | Hypothetical protein; Probably involved in the biogenesis of the ribosome. | SSU ribosomal protein S4AB (rps4AB); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.575 |
SSO0731 | rrp4 | SSO0731 | SSO0736 | Hypothetical protein; Probably involved in the biogenesis of the ribosome. | Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome. Belongs to the RRP4 family. | 0.970 |
SSO0731 | rrp42 | SSO0731 | SSO0732 | Hypothetical protein; Probably involved in the biogenesis of the ribosome. | Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site; Belongs to the RNase PH family. Rrp42 subfamily. | 0.909 |
SSO0731 | rtcA | SSO0731 | SSO2446 | Hypothetical protein; Probably involved in the biogenesis of the ribosome. | RNA 3' terminal phosphate cyclase (RNA 3' phosphate cyclase) (RNA cyclase) (rtcA); Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing (By similarity). | 0.718 |
SSO0939 | SSO0731 | SSO0939 | SSO0731 | Pre mRNA splicing protein; Regulation, RNA modification. | Hypothetical protein; Probably involved in the biogenesis of the ribosome. | 0.881 |
SSO0939 | SSO2373 | SSO0939 | SSO2373 | Pre mRNA splicing protein; Regulation, RNA modification. | Conserved hypothetical protein; MJ0443. | 0.991 |
SSO0939 | csl4 | SSO0939 | SSO0292 | Pre mRNA splicing protein; Regulation, RNA modification. | Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. | 0.963 |
SSO0939 | nep1 | SSO0939 | SSO2226 | Pre mRNA splicing protein; Regulation, RNA modification. | Conserved hypothetical protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | 0.998 |
SSO0939 | rph | SSO0939 | SSO0735 | Pre mRNA splicing protein; Regulation, RNA modification. | Ribonuclease PH (rph); Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3'->5' exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails. Binds RNA. Belongs to the RNase PH family. Rrp41 subfamily. | 0.898 |
SSO0939 | rps4AB | SSO0939 | SSO0073 | Pre mRNA splicing protein; Regulation, RNA modification. | SSU ribosomal protein S4AB (rps4AB); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.984 |
SSO0939 | rrp4 | SSO0939 | SSO0736 | Pre mRNA splicing protein; Regulation, RNA modification. | Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome. Belongs to the RRP4 family. | 0.948 |
SSO0939 | rrp42 | SSO0939 | SSO0732 | Pre mRNA splicing protein; Regulation, RNA modification. | Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site; Belongs to the RNase PH family. Rrp42 subfamily. | 0.949 |
SSO0939 | rtcA | SSO0939 | SSO2446 | Pre mRNA splicing protein; Regulation, RNA modification. | RNA 3' terminal phosphate cyclase (RNA 3' phosphate cyclase) (RNA cyclase) (rtcA); Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing (By similarity). | 0.975 |
SSO2373 | SSO0731 | SSO2373 | SSO0731 | Conserved hypothetical protein; MJ0443. | Hypothetical protein; Probably involved in the biogenesis of the ribosome. | 0.887 |
SSO2373 | SSO0939 | SSO2373 | SSO0939 | Conserved hypothetical protein; MJ0443. | Pre mRNA splicing protein; Regulation, RNA modification. | 0.991 |