Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SSO0902 | SSO0903 | SSO0902 | SSO0903 | Hypothetical protein. | Hypothetical protein. | 0.544 |
SSO0902 | SSO6759 | SSO0902 | SSO6759 | Hypothetical protein. | Hypothetical protein. | 0.780 |
SSO0902 | ogG | SSO0902 | SSO0904 | Hypothetical protein. | 8-oxoguanine DNA glycosylase (ogG); Responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine = 7-oxoG) from DNA. Also nicks DNA at apurinic/apyrimidinic sites (AP sites); Belongs to the type-2 OGG1 family. | 0.544 |
SSO0903 | SSO0902 | SSO0903 | SSO0902 | Hypothetical protein. | Hypothetical protein. | 0.544 |
SSO0903 | SSO0906 | SSO0903 | SSO0906 | Hypothetical protein. | Soluble hydrogenase, small subunit; Uncategorized. | 0.485 |
SSO0903 | SSO6759 | SSO0903 | SSO6759 | Hypothetical protein. | Hypothetical protein. | 0.564 |
SSO0903 | ogG | SSO0903 | SSO0904 | Hypothetical protein. | 8-oxoguanine DNA glycosylase (ogG); Responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine = 7-oxoG) from DNA. Also nicks DNA at apurinic/apyrimidinic sites (AP sites); Belongs to the type-2 OGG1 family. | 0.849 |
SSO0903 | rpoK | SSO0903 | SSO6768 | Hypothetical protein. | DNA-directed RNA polymerase subunit K (rpoK); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family. | 0.473 |
SSO0903 | serA-1 | SSO0903 | SSO0905 | Hypothetical protein. | D-3-phosphoglycerate dehydrogenase (serA-1); Amino Acid Biosynthesis, Histidine; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.480 |
SSO0903 | topA | SSO0903 | SSO0907 | Hypothetical protein. | DNA topoisomerase I family A (topA); Replication and Repair. | 0.463 |
SSO0906 | SSO0903 | SSO0906 | SSO0903 | Soluble hydrogenase, small subunit; Uncategorized. | Hypothetical protein. | 0.485 |
SSO0906 | ogG | SSO0906 | SSO0904 | Soluble hydrogenase, small subunit; Uncategorized. | 8-oxoguanine DNA glycosylase (ogG); Responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine = 7-oxoG) from DNA. Also nicks DNA at apurinic/apyrimidinic sites (AP sites); Belongs to the type-2 OGG1 family. | 0.557 |
SSO0906 | rpoK | SSO0906 | SSO6768 | Soluble hydrogenase, small subunit; Uncategorized. | DNA-directed RNA polymerase subunit K (rpoK); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family. | 0.800 |
SSO0906 | serA-1 | SSO0906 | SSO0905 | Soluble hydrogenase, small subunit; Uncategorized. | D-3-phosphoglycerate dehydrogenase (serA-1); Amino Acid Biosynthesis, Histidine; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.950 |
SSO0906 | topA | SSO0906 | SSO0907 | Soluble hydrogenase, small subunit; Uncategorized. | DNA topoisomerase I family A (topA); Replication and Repair. | 0.792 |
SSO6759 | SSO0902 | SSO6759 | SSO0902 | Hypothetical protein. | Hypothetical protein. | 0.780 |
SSO6759 | SSO0903 | SSO6759 | SSO0903 | Hypothetical protein. | Hypothetical protein. | 0.564 |
SSO6759 | ogG | SSO6759 | SSO0904 | Hypothetical protein. | 8-oxoguanine DNA glycosylase (ogG); Responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine = 7-oxoG) from DNA. Also nicks DNA at apurinic/apyrimidinic sites (AP sites); Belongs to the type-2 OGG1 family. | 0.574 |
dpo4 | ogG | SSO2448 | SSO0904 | DNA polymerase IV (family Y) (dpo4); Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. It is involved in translesional synthesis. | 8-oxoguanine DNA glycosylase (ogG); Responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine = 7-oxoG) from DNA. Also nicks DNA at apurinic/apyrimidinic sites (AP sites); Belongs to the type-2 OGG1 family. | 0.593 |
dpo4 | rad50 | SSO2448 | SSO2249 | DNA polymerase IV (family Y) (dpo4); Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. It is involved in translesional synthesis. | Purine NTPase; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50/Mre11 complex; Belongs to the SMC family. RAD50 subfamily. | 0.728 |
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