Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSO2123First ORF in transposon ISC1316. (287 aa)    
Predicted Functional Partners:
SSO2124
Second ORF in transposon ISC1316.
     0.925
SSO1659
Second ORF in transposon ISC1904.
  
     0.666
SSO2944
Second ORF in transposon ISC1904.
  
     0.650
SSO1498
Second ORF in transposon ISC1904.
  
     0.635
SSO1216
Second ORF in transposon ISC1904.
  
     0.623
SSO3172
Second ORF in transposon ISC1904.
  
     0.614
SSO1072
Second ORF in transposon ISC1904.
  
     0.609
SSO1336
Second ORF in transposon ISC1904.
  
     0.608
SSO3153
Second ORF in transposon ISC1904.
  
     0.607
SSO1829
Second ORF in transposon ISC1904.
  
     0.596
Your Current Organism:
Saccharolobus solfataricus
NCBI taxonomy Id: 273057
Other names: S. solfataricus P2, Saccharolobus solfataricus P2, Sulfolobus solfataricus P2
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