Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ST0209 | ST0945 | STK_02090 | STK_09450 | ATPase; N-term changed (+252); protein synonym:CDC48/VCP homolog. | Putative GTPase. | 0.631 |
ST0209 | STK_02084 | STK_02090 | STK_02084 | ATPase; N-term changed (+252); protein synonym:CDC48/VCP homolog. | Hypothetical protein. | 0.656 |
ST0209 | STK_02095 | STK_02090 | STK_02095 | ATPase; N-term changed (+252); protein synonym:CDC48/VCP homolog. | Hypothetical protein. | 0.792 |
ST0209 | ef1b | STK_02090 | STK_02087 | ATPase; N-term changed (+252); protein synonym:CDC48/VCP homolog. | Elongation factor 1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. | 0.666 |
ST0209 | fen-1 | STK_02090 | STK_02100 | ATPase; N-term changed (+252); protein synonym:CDC48/VCP homolog. | Flap endonuclease-1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. A [...] | 0.831 |
ST0209 | psmA | STK_02090 | STK_04460 | ATPase; N-term changed (+252); protein synonym:CDC48/VCP homolog. | Proteasome alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.596 |
ST0209 | pth | STK_02090 | STK_02080 | ATPase; N-term changed (+252); protein synonym:CDC48/VCP homolog. | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. | 0.557 |
ST0209 | pus7 | STK_02090 | STK_02070 | ATPase; N-term changed (+252); protein synonym:CDC48/VCP homolog. | Putative tRNA pseudouridine synthase Pus7; Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. | 0.400 |
ST0945 | ST0209 | STK_09450 | STK_02090 | Putative GTPase. | ATPase; N-term changed (+252); protein synonym:CDC48/VCP homolog. | 0.631 |
ST0945 | fen-1 | STK_09450 | STK_02100 | Putative GTPase. | Flap endonuclease-1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. A [...] | 0.486 |
ST0945 | psmA | STK_09450 | STK_04460 | Putative GTPase. | Proteasome alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.501 |
ST0945 | pth | STK_09450 | STK_02080 | Putative GTPase. | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. | 0.640 |
ST0945 | rpoD | STK_09450 | STK_20670 | Putative GTPase. | DNA-directed RNA polymerase subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.559 |
STK_02084 | ST0209 | STK_02084 | STK_02090 | Hypothetical protein. | ATPase; N-term changed (+252); protein synonym:CDC48/VCP homolog. | 0.656 |
STK_02084 | STK_02095 | STK_02084 | STK_02095 | Hypothetical protein. | Hypothetical protein. | 0.754 |
STK_02084 | ef1b | STK_02084 | STK_02087 | Hypothetical protein. | Elongation factor 1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. | 0.983 |
STK_02084 | fen-1 | STK_02084 | STK_02100 | Hypothetical protein. | Flap endonuclease-1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. A [...] | 0.754 |
STK_02084 | pth | STK_02084 | STK_02080 | Hypothetical protein. | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. | 0.722 |
STK_02084 | pus7 | STK_02084 | STK_02070 | Hypothetical protein. | Putative tRNA pseudouridine synthase Pus7; Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. | 0.646 |
STK_02095 | ST0209 | STK_02095 | STK_02090 | Hypothetical protein. | ATPase; N-term changed (+252); protein synonym:CDC48/VCP homolog. | 0.792 |
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