Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ST0233 | aif2/5b | STK_02330 | STK_02790 | Putative protein kinase. | Translation initiation factor aIF2/5B; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. | 0.451 |
ST0233 | rpl30e | STK_02330 | STK_02740 | Putative protein kinase. | 50S ribosomal protein L30e; Belongs to the eukaryotic ribosomal protein eL30 family. | 0.405 |
ST0233 | rpl40e | STK_02330 | STK_02035 | Putative protein kinase. | 50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family. | 0.433 |
ST0233 | rpoB | STK_02330 | STK_02770 | Putative protein kinase. | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.541 |
ST0233 | rps10p | STK_02330 | STK_02680 | Putative protein kinase. | 30S ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.993 |
ST0233 | rps12p | STK_02330 | STK_02720 | Putative protein kinase. | 30S ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. | 0.963 |
ST0233 | rps28e | STK_02330 | STK_02807 | Putative protein kinase. | 30S ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family. | 0.937 |
ST0233 | rps5p | STK_02330 | STK_04140 | Putative protein kinase. | 30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy. | 0.999 |
ST0233 | rps7p | STK_02330 | STK_02700 | Putative protein kinase. | 30S ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. | 0.990 |
aif2/5b | ST0233 | STK_02790 | STK_02330 | Translation initiation factor aIF2/5B; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. | Putative protein kinase. | 0.451 |
aif2/5b | rpl24e | STK_02790 | STK_02804 | Translation initiation factor aIF2/5B; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. | 50S ribosomal protein L24e; Binds to the 23S rRNA. | 0.977 |
aif2/5b | rpl30e | STK_02790 | STK_02740 | Translation initiation factor aIF2/5B; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. | 50S ribosomal protein L30e; Belongs to the eukaryotic ribosomal protein eL30 family. | 0.985 |
aif2/5b | rpl40e | STK_02790 | STK_02035 | Translation initiation factor aIF2/5B; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. | 50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family. | 0.791 |
aif2/5b | rpoB | STK_02790 | STK_02770 | Translation initiation factor aIF2/5B; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.993 |
aif2/5b | rps10p | STK_02790 | STK_02680 | Translation initiation factor aIF2/5B; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. | 30S ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
aif2/5b | rps12p | STK_02790 | STK_02720 | Translation initiation factor aIF2/5B; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. | 30S ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. | 0.999 |
aif2/5b | rps28e | STK_02790 | STK_02807 | Translation initiation factor aIF2/5B; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. | 30S ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family. | 0.998 |
aif2/5b | rps5p | STK_02790 | STK_04140 | Translation initiation factor aIF2/5B; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. | 30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy. | 0.999 |
aif2/5b | rps7p | STK_02790 | STK_02700 | Translation initiation factor aIF2/5B; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. | 30S ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
rpl24e | aif2/5b | STK_02804 | STK_02790 | 50S ribosomal protein L24e; Binds to the 23S rRNA. | Translation initiation factor aIF2/5B; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. | 0.977 |
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