Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ST0661 | moaD/moaE | STK_06610 | STK_05270 | Ammonium transporter. | Molybdopterin converting factor; Protein synonym:molybdopterin synthase MoaE/MoaD. | 0.586 |
ST0661 | speB | STK_06610 | STK_03520 | Ammonium transporter. | Agmatinase; Belongs to the arginase family. | 0.494 |
ST0661 | ureAB | STK_06610 | STK_10290 | Ammonium transporter. | Urease gamma/beta subunit; N-term changed (-15); In the N-terminal section; belongs to the urease gamma subunit family. | 0.932 |
ST0661 | ureC | STK_06610 | STK_10280 | Ammonium transporter. | Urease alpha subunit; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.658 |
ST0661 | ureD | STK_06610 | STK_10240 | Ammonium transporter. | Urease accessory protein UreD; N-term changed (+123). | 0.622 |
ST0661 | ureF | STK_06610 | STK_10260 | Ammonium transporter. | Urease accessory protein UreF; N-term changed (+87). | 0.462 |
ST0661 | ureG | STK_06610 | STK_10250 | Ammonium transporter. | Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.524 |
ST0841 | moaD/moaE | STK_08410 | STK_05270 | Putative ABC transporter permease protein. | Molybdopterin converting factor; Protein synonym:molybdopterin synthase MoaE/MoaD. | 0.553 |
ST0841 | ureAB | STK_08410 | STK_10290 | Putative ABC transporter permease protein. | Urease gamma/beta subunit; N-term changed (-15); In the N-terminal section; belongs to the urease gamma subunit family. | 0.713 |
hypA | ureAB | STK_10460 | STK_10290 | Putative hydrogenase nickel incorporation protein HypA; N-term changed (-45). | Urease gamma/beta subunit; N-term changed (-15); In the N-terminal section; belongs to the urease gamma subunit family. | 0.907 |
hypA | ureD | STK_10460 | STK_10240 | Putative hydrogenase nickel incorporation protein HypA; N-term changed (-45). | Urease accessory protein UreD; N-term changed (+123). | 0.480 |
hypA | ureF | STK_10460 | STK_10260 | Putative hydrogenase nickel incorporation protein HypA; N-term changed (-45). | Urease accessory protein UreF; N-term changed (+87). | 0.672 |
hypA | ureG | STK_10460 | STK_10250 | Putative hydrogenase nickel incorporation protein HypA; N-term changed (-45). | Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.951 |
moaD/moaE | ST0661 | STK_05270 | STK_06610 | Molybdopterin converting factor; Protein synonym:molybdopterin synthase MoaE/MoaD. | Ammonium transporter. | 0.586 |
moaD/moaE | ST0841 | STK_05270 | STK_08410 | Molybdopterin converting factor; Protein synonym:molybdopterin synthase MoaE/MoaD. | Putative ABC transporter permease protein. | 0.553 |
moaD/moaE | ureAB | STK_05270 | STK_10290 | Molybdopterin converting factor; Protein synonym:molybdopterin synthase MoaE/MoaD. | Urease gamma/beta subunit; N-term changed (-15); In the N-terminal section; belongs to the urease gamma subunit family. | 0.693 |
speB | ST0661 | STK_03520 | STK_06610 | Agmatinase; Belongs to the arginase family. | Ammonium transporter. | 0.494 |
speB | ureAB | STK_03520 | STK_10290 | Agmatinase; Belongs to the arginase family. | Urease gamma/beta subunit; N-term changed (-15); In the N-terminal section; belongs to the urease gamma subunit family. | 0.707 |
speB | ureD | STK_03520 | STK_10240 | Agmatinase; Belongs to the arginase family. | Urease accessory protein UreD; N-term changed (+123). | 0.456 |
speB | ureG | STK_03520 | STK_10250 | Agmatinase; Belongs to the arginase family. | Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.437 |
page 1 of 4