Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ST0613 | ST0616 | STK_06130 | STK_06160 | Hypothetical protein. | Hypothetical protein. | 0.767 |
ST0613 | ST1099 | STK_06130 | STK_10990 | Hypothetical protein. | Putative ABC transporter permease/ATP-binding protein. | 0.760 |
ST0613 | moaD/moaE | STK_06130 | STK_05270 | Hypothetical protein. | Molybdopterin converting factor; Protein synonym:molybdopterin synthase MoaE/MoaD. | 0.925 |
ST0613 | rpl11p | STK_06130 | STK_13680 | Hypothetical protein. | 50S ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | 0.876 |
ST0613 | rpl13p | STK_06130 | STK_20650 | Hypothetical protein. | 50S ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.850 |
ST0613 | rpl15p | STK_06130 | STK_04120 | Hypothetical protein. | 50S ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.840 |
ST0613 | rpl24p | STK_06130 | STK_04215 | Hypothetical protein. | 50S ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.844 |
ST0613 | rpl3p | STK_06130 | STK_04290 | Hypothetical protein. | 50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.856 |
ST0613 | rps17p | STK_06130 | STK_04230 | Hypothetical protein. | 30S ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.936 |
ST0613 | sod | STK_06130 | STK_22830 | Hypothetical protein. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.984 |
ST0616 | ST0613 | STK_06160 | STK_06130 | Hypothetical protein. | Hypothetical protein. | 0.767 |
ST1099 | ST0613 | STK_10990 | STK_06130 | Putative ABC transporter permease/ATP-binding protein. | Hypothetical protein. | 0.760 |
ST1099 | rps17p | STK_10990 | STK_04230 | Putative ABC transporter permease/ATP-binding protein. | 30S ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.730 |
ST1099 | sod | STK_10990 | STK_22830 | Putative ABC transporter permease/ATP-binding protein. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.749 |
moaD/moaE | ST0613 | STK_05270 | STK_06130 | Molybdopterin converting factor; Protein synonym:molybdopterin synthase MoaE/MoaD. | Hypothetical protein. | 0.925 |
moaD/moaE | rpl15p | STK_05270 | STK_04120 | Molybdopterin converting factor; Protein synonym:molybdopterin synthase MoaE/MoaD. | 50S ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.625 |
moaD/moaE | rpl24p | STK_05270 | STK_04215 | Molybdopterin converting factor; Protein synonym:molybdopterin synthase MoaE/MoaD. | 50S ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.685 |
moaD/moaE | rpl3p | STK_05270 | STK_04290 | Molybdopterin converting factor; Protein synonym:molybdopterin synthase MoaE/MoaD. | 50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.614 |
rpl11p | ST0613 | STK_13680 | STK_06130 | 50S ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | Hypothetical protein. | 0.876 |
rpl11p | rpl13p | STK_13680 | STK_20650 | 50S ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | 50S ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
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