STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LytRTranscriptional regulator; Best Blastp hit = gi|7430406|pir||S75661 membrane-bound protein lytR - Synechocystis sp. (strain PCC 6803) gi|1653307|dbj|BAA18222.1| (D90912) membrane bound protein LytR [Synechocystis sp.], score 163, E-value 3.00E-39. (404 aa)    
Predicted Functional Partners:
WcaK
Conserved hypothetical protein; Best Blastp hit = gi|8247358|emb|CAB92958.1| (AJ401026) putative pyruvyl-transferase [Thermoanaerobacter thermohydrosulfuricus], score 526, E-value 1.00E-148.
 
     0.715
Rfe
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; Best Blastp hit = gi|7449552|pir||B69721 teichoic acid linkage unit synthesis tagO - Bacillus subtilis gi|2582651|emb|CAA06152.1| (AJ004803) putative undecaprenyl-phosphate N-acetylglucosaminyltransferase [Bacillus subtilis] gi|2636079|emb|CAB15570.1| (Z99122) alternate gene name: yvhI [Bacillus subtilis], score 236, E-value 3.00E-61.
 
  
 0.690
OmpR
Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; Best Blastp hit = gi|6687469|emb|CAB64972.1| (AJ012050) VicR protein [Enterococcus faecalis], score 216, E-value 2.00E-55.
  
  
 0.669
WecG
Teichoic acid biosynthesis proteins; Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid.
 
   
 0.648
TTE2605
S-layer homology domain protein; Best Blastp hit = gi|12584561|emb|CAC27412.1| '(AJ307315) endo-1,3(4)-beta-glucanase [Clostridium thermocellum]', score 87, E-value 2.00E-16.
  
    0.622
Hpt
Best Blastp hit = gi|10172696|dbj|BAB03803.1| (AP001507) hypoxanthine-guanine phosphoribosyltransferase [Bacillus halodurans], score 189, E-value 2.00E-47; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
  
  
 0.565
TTE0027
Transposase; Best Blastp hit = gi|624698|gb|AAB42162.1| (L38972) transposase [Plasmid pHKK701], score 72.4, E-value 1.00E-11.
       0.521
sepF
Conserved hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.
  
   
 0.500
TTE2165
Conserved hypothetical protein; Best Blastp hit = gi|8247357|emb|CAB92957.1| (AJ401026) hypothetical protein [Thermoanaerobacter thermohydrosulfuricus], score 779, E-value 0.
 
     0.495
TTE0486
Conserved hypothetical protein; Best Blastp hit = gi|7462418|pir||A72228 hypothetical protein - Thermotoga maritima (strain MSB8) gi|4982226|gb|AAD36719.1|AE001807_10 (AE001807) hypothetical protein [Thermotoga maritima], score 77, E-value 9.00E-13.
 
     0.481
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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