STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTE0100Predicted permease; Best Blastp hit = gi|12725284|gb|AAK06316.1|AE006450_9 (AE006450) permease [Lactococcus lactis subsp. lactis], score 241, E-value 8.00E-63. (277 aa)    
Predicted Functional Partners:
TTE0099
Conserved hypothetical protein; Best Blastp hit = gi|12725283|gb|AAK06315.1|AE006450_8 (AE006450) UNKNOWN PROTEIN [Lactococcus lactis subsp. lactis], score 60.1, E-value 1.00E-08.
 
  
 0.956
TTE0101
Conserved hypothetical protein; Best Blastp hit = gi|10173162|dbj|BAB04268.1| (AP001508) BH0549; unknown [Bacillus halodurans], score 173, E-value 6.00E-42.
       0.595
ArcA
Arginine deiminase; Best Blastp hit = gi|10719880|sp|O86131|ARCA_BACLI ARGININE DEIMINASE (ADI) (ARGININE DIHYDROLASE) (AD) gi|3687416|emb|CAA76777.1| (Y17554) arginine deiminase [Bacillus licheniformis], score 383, E-value 1.00E-105.
       0.419
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.