Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| IspE | KsgA | TTE2559 | TTE0113 | 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | Dimethyladenosine transferase (rRNA methylation); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.955 |
| IspE | TTE0112 | TTE2559 | TTE0112 | 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | Conserved hypothetical protein; Best Blastp hit = gi|586876|sp|P37546|YABE_BACSU HYPOTHETICAL 47.7 KD PROTEIN IN METS-KSGA INTERGENIC REGION gi|2127034|pir||S66069 conserved hypothetical protein yabE - Bacillus subtilis gi|467429|dbj|BAA05275.1| (D26185) unknown [Bacillus subtilis] gi|2632307|emb|CAB11816.1| (Z99104) similar to hypothetical proteins [Bacillus subtilis], score 179, E-value 4.00E-44. | 0.757 |
| KsgA | IspE | TTE0113 | TTE2559 | Dimethyladenosine transferase (rRNA methylation); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.955 |
| KsgA | RpsB | TTE0113 | TTE1409 | Dimethyladenosine transferase (rRNA methylation); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Ribosomal protein S2; Best Blastp hit = gi|10175047|dbj|BAB06146.1| (AP001515) 30S ribosomal protein S2 [Bacillus halodurans], score 367, E-value 1.00E-100; Belongs to the universal ribosomal protein uS2 family. | 0.927 |
| KsgA | RpsD | TTE0113 | TTE2264 | Dimethyladenosine transferase (rRNA methylation); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Ribosomal protein S4 and related proteins; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.925 |
| KsgA | RpsG | TTE0113 | TTE2297 | Dimethyladenosine transferase (rRNA methylation); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.916 |
| KsgA | RpsH | TTE0113 | TTE2277 | Dimethyladenosine transferase (rRNA methylation); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.918 |
| KsgA | RpsJ | TTE0113 | TTE2294 | Dimethyladenosine transferase (rRNA methylation); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.925 |
| KsgA | RpsL | TTE0113 | TTE2298 | Dimethyladenosine transferase (rRNA methylation); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.911 |
| KsgA | RpsQ | TTE0113 | TTE2283 | Dimethyladenosine transferase (rRNA methylation); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.920 |
| KsgA | TTE0112 | TTE0113 | TTE0112 | Dimethyladenosine transferase (rRNA methylation); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Conserved hypothetical protein; Best Blastp hit = gi|586876|sp|P37546|YABE_BACSU HYPOTHETICAL 47.7 KD PROTEIN IN METS-KSGA INTERGENIC REGION gi|2127034|pir||S66069 conserved hypothetical protein yabE - Bacillus subtilis gi|467429|dbj|BAA05275.1| (D26185) unknown [Bacillus subtilis] gi|2632307|emb|CAB11816.1| (Z99104) similar to hypothetical proteins [Bacillus subtilis], score 179, E-value 4.00E-44. | 0.941 |
| KsgA | TatD | TTE0113 | TTE0111 | Dimethyladenosine transferase (rRNA methylation); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Mg-dependent DNase; Best Blastp hit = gi|586875|sp|P37545|YABD_BACSU PUTATIVE DEOXYRIBONUCLEASE YABD gi|2127033|pir||S66068 conserved hypothetical protein yabD - Bacillus subtilis gi|467428|dbj|BAA05274.1| (D26185) unknown [Bacillus subtilis] gi|2632306|emb|CAB11815.1| (Z99104) similar to hypothetical proteins [Bacillus subtilis], score 240, E-value 1.00E-62. | 0.925 |
| RpsB | KsgA | TTE1409 | TTE0113 | Ribosomal protein S2; Best Blastp hit = gi|10175047|dbj|BAB06146.1| (AP001515) 30S ribosomal protein S2 [Bacillus halodurans], score 367, E-value 1.00E-100; Belongs to the universal ribosomal protein uS2 family. | Dimethyladenosine transferase (rRNA methylation); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.927 |
| RpsB | RpsD | TTE1409 | TTE2264 | Ribosomal protein S2; Best Blastp hit = gi|10175047|dbj|BAB06146.1| (AP001515) 30S ribosomal protein S2 [Bacillus halodurans], score 367, E-value 1.00E-100; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S4 and related proteins; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
| RpsB | RpsG | TTE1409 | TTE2297 | Ribosomal protein S2; Best Blastp hit = gi|10175047|dbj|BAB06146.1| (AP001515) 30S ribosomal protein S2 [Bacillus halodurans], score 367, E-value 1.00E-100; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
| RpsB | RpsH | TTE1409 | TTE2277 | Ribosomal protein S2; Best Blastp hit = gi|10175047|dbj|BAB06146.1| (AP001515) 30S ribosomal protein S2 [Bacillus halodurans], score 367, E-value 1.00E-100; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
| RpsB | RpsJ | TTE1409 | TTE2294 | Ribosomal protein S2; Best Blastp hit = gi|10175047|dbj|BAB06146.1| (AP001515) 30S ribosomal protein S2 [Bacillus halodurans], score 367, E-value 1.00E-100; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
| RpsB | RpsL | TTE1409 | TTE2298 | Ribosomal protein S2; Best Blastp hit = gi|10175047|dbj|BAB06146.1| (AP001515) 30S ribosomal protein S2 [Bacillus halodurans], score 367, E-value 1.00E-100; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.999 |
| RpsB | RpsQ | TTE1409 | TTE2283 | Ribosomal protein S2; Best Blastp hit = gi|10175047|dbj|BAB06146.1| (AP001515) 30S ribosomal protein S2 [Bacillus halodurans], score 367, E-value 1.00E-100; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.999 |
| RpsD | KsgA | TTE2264 | TTE0113 | Ribosomal protein S4 and related proteins; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Dimethyladenosine transferase (rRNA methylation); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.925 |
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