Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AcrA | CspR | TTE0256 | TTE0253 | Membrane-fusion protein; Best Blastp hit = gi|12721480|gb|AAK03218.1| (AE006154) unknown [Pasteurella multocida], score 78.6, E-value 2.00E-13. | Predicted rRNA methylase (SpoU class); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | 0.512 |
| AcrA | DinP | TTE0256 | TTE0254 | Membrane-fusion protein; Best Blastp hit = gi|12721480|gb|AAK03218.1| (AE006154) unknown [Pasteurella multocida], score 78.6, E-value 2.00E-13. | Nucleotidyltransferase/DNA polymerase involved in DNA repair; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.512 |
| AcrA | NorM | TTE0256 | TTE0255 | Membrane-fusion protein; Best Blastp hit = gi|12721480|gb|AAK03218.1| (AE006154) unknown [Pasteurella multocida], score 78.6, E-value 2.00E-13. | Na+-driven multidrug efflux pump; Best Blastp hit = gi|7462346|pir||H72331 conserved hypothetical protein - Thermotoga maritima (strain MSB8) gi|4981345|gb|AAD35897.1|AE001748_13 (AE001748) conserved hypothetical protein [Thermotoga maritima], score 206, E-value 5.00E-52. | 0.563 |
| AcrA | PhnL | TTE0256 | TTE0257 | Membrane-fusion protein; Best Blastp hit = gi|12721480|gb|AAK03218.1| (AE006154) unknown [Pasteurella multocida], score 78.6, E-value 2.00E-13. | ABC-type transport systems, involved in lipoprotein release, ATPase components; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. | 0.979 |
| AcrA | TTE0258 | TTE0256 | TTE0258 | Membrane-fusion protein; Best Blastp hit = gi|12721480|gb|AAK03218.1| (AE006154) unknown [Pasteurella multocida], score 78.6, E-value 2.00E-13. | ABC-type transport systems, involved in lipoprotein release, permease components; Best Blastp hit = gi|7469821|pir||S76946 hypothetical protein - Synechocystis sp. (strain PCC 6803) gi|1653948|dbj|BAA18858.1| (D90917) hypothetical protein [Synechocystis sp.], score 185, E-value 8.00E-46. | 0.995 |
| CspR | AcrA | TTE0253 | TTE0256 | Predicted rRNA methylase (SpoU class); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Membrane-fusion protein; Best Blastp hit = gi|12721480|gb|AAK03218.1| (AE006154) unknown [Pasteurella multocida], score 78.6, E-value 2.00E-13. | 0.512 |
| CspR | DegV | TTE0253 | TTE1491 | Predicted rRNA methylase (SpoU class); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Conserved hypothetical protein; May bind long-chain fatty acids, such as palmitate, and may play a role in lipid transport or fatty acid metabolism. | 0.438 |
| CspR | DinP | TTE0253 | TTE0254 | Predicted rRNA methylase (SpoU class); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Nucleotidyltransferase/DNA polymerase involved in DNA repair; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.784 |
| CspR | NorM | TTE0253 | TTE0255 | Predicted rRNA methylase (SpoU class); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Na+-driven multidrug efflux pump; Best Blastp hit = gi|7462346|pir||H72331 conserved hypothetical protein - Thermotoga maritima (strain MSB8) gi|4981345|gb|AAD35897.1|AE001748_13 (AE001748) conserved hypothetical protein [Thermotoga maritima], score 206, E-value 5.00E-52. | 0.783 |
| CspR | OadB | TTE0253 | TTE0252 | Predicted rRNA methylase (SpoU class); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD). | 0.415 |
| CspR | PhnL | TTE0253 | TTE0257 | Predicted rRNA methylase (SpoU class); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | ABC-type transport systems, involved in lipoprotein release, ATPase components; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. | 0.523 |
| CspR | SplB | TTE0253 | TTE2677 | Predicted rRNA methylase (SpoU class); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | DNA repair photolyase; Best Blastp hit = gi|586030|sp|P37956|SPL_BACSU SPORE PHOTOPRODUCT LYASE gi|421532|pir||C47084 spore photoproduct lyase splB - Bacillus subtilis gi|289270|gb|AAA22416.1| (L08809) spore photoproduct lyase [Bacillus subtilis] gi|2633764|emb|CAB13266.1| (Z99111) spore photoproduct lyase [Bacillus subtilis], score 70.9, E-value 2.00E-11. | 0.443 |
| CspR | Sun2 | TTE0253 | TTE2147 | Predicted rRNA methylase (SpoU class); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | tRNA and rRNA cytosine-C5-methylases; Best Blastp hit = gi|13622373|gb|AAK34101.1| (AE006564) putative nucleolar protein [Streptococcus pyogenes], score 280, E-value 3.00E-74. | 0.418 |
| CspR | TTE0258 | TTE0253 | TTE0258 | Predicted rRNA methylase (SpoU class); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | ABC-type transport systems, involved in lipoprotein release, permease components; Best Blastp hit = gi|7469821|pir||S76946 hypothetical protein - Synechocystis sp. (strain PCC 6803) gi|1653948|dbj|BAA18858.1| (D90917) hypothetical protein [Synechocystis sp.], score 185, E-value 8.00E-46. | 0.512 |
| CspR | TpiA | TTE0253 | TTE1760 | Predicted rRNA methylase (SpoU class); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. | 0.723 |
| DegV | CspR | TTE1491 | TTE0253 | Conserved hypothetical protein; May bind long-chain fatty acids, such as palmitate, and may play a role in lipid transport or fatty acid metabolism. | Predicted rRNA methylase (SpoU class); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | 0.438 |
| DinP | AcrA | TTE0254 | TTE0256 | Nucleotidyltransferase/DNA polymerase involved in DNA repair; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | Membrane-fusion protein; Best Blastp hit = gi|12721480|gb|AAK03218.1| (AE006154) unknown [Pasteurella multocida], score 78.6, E-value 2.00E-13. | 0.512 |
| DinP | CspR | TTE0254 | TTE0253 | Nucleotidyltransferase/DNA polymerase involved in DNA repair; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | Predicted rRNA methylase (SpoU class); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | 0.784 |
| DinP | NorM | TTE0254 | TTE0255 | Nucleotidyltransferase/DNA polymerase involved in DNA repair; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | Na+-driven multidrug efflux pump; Best Blastp hit = gi|7462346|pir||H72331 conserved hypothetical protein - Thermotoga maritima (strain MSB8) gi|4981345|gb|AAD35897.1|AE001748_13 (AE001748) conserved hypothetical protein [Thermotoga maritima], score 206, E-value 5.00E-52. | 0.802 |
| DinP | OadB | TTE0254 | TTE0252 | Nucleotidyltransferase/DNA polymerase involved in DNA repair; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD). | 0.415 |
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