STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TauBABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, ATPase components; Best Blastp hit = gi|7445666|pir||C69995 anion transport ABC transporter (ATP-bindi) homolog ytlC - Bacillus subtilis gi|2293296|gb|AAC00374.1| (AF008220) putative transporter [Bacillus subtilis] gi|2635545|emb|CAB15039.1| (Z99119) similar to anion transport ABC transporter (ATP-binding protein) [Bacillus subtilis], score 236, E-value 2.00E-61. (248 aa)    
Predicted Functional Partners:
TauC
ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, permease components; Best Blastp hit = gi|7444957|pir||D69995 ABC transporter (permease) homolog ytlD - Bacillus subtilis gi|2293295|gb|AAC00373.1| (AF008220) YtlD [Bacillus subtilis] gi|2635546|emb|CAB15040.1| (Z99119) similar to ABC transporter (permease) [Bacillus subtilis], score 253, E-value 2.00E-66.
  
 0.997
TauA
ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, periplasmic components; Best Blastp hit = gi|7475400|pir||A69995 hypothetical protein ytlA - Bacillus subtilis gi|2293298|gb|AAC00376.1| (AF008220) putative transcription regulator [Bacillus subtilis] gi|2635543|emb|CAB15037.1| (Z99119) ytlA [Bacillus subtilis], score 181, E-value 2.00E-44.
 
  
 0.990
TTE0258
ABC-type transport systems, involved in lipoprotein release, permease components; Best Blastp hit = gi|7469821|pir||S76946 hypothetical protein - Synechocystis sp. (strain PCC 6803) gi|1653948|dbj|BAA18858.1| (D90917) hypothetical protein [Synechocystis sp.], score 185, E-value 8.00E-46.
 
      0.872
TTE1198
ABC-type transport systems, involved in lipoprotein release, permease components; Best Blastp hit = gi|7469821|pir||S76946 hypothetical protein - Synechocystis sp. (strain PCC 6803) gi|1653948|dbj|BAA18858.1| (D90917) hypothetical protein [Synechocystis sp.], score 196, E-value 4.00E-49.
 
      0.818
NadE
NAD synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
       0.658
RhaT
Best Blastp hit = gi|13542327|ref|NP_112015.1| Predicted permease (drug/metabolite transporter superfamily) [Thermoplasma volcanium], score 134, E-value 2.00E-30.
  
  
 0.598
MdlB2
ABC-type multidrug/protein/lipid transport system, ATPase component; Best Blastp hit = gi|10174956|dbj|BAB06055.1| (AP001515) ABC transporter (ATP-binding protein) [Bacillus halodurans], score 473, E-value 1.00E-132.
 
    
0.536
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.504
TTE0719
Conserved hypothetical protein; Best Blastp hit = gi|11498809|ref|NP_070038.1| conserved hypothetical protein [Archaeoglobus fulgidus] gi|7483100|pir||A69401 conserved hypothetical protein AF1210 - Archaeoglobus fulgidus gi|2649377|gb|AAB90037.1| (AE001021) conserved hypothetical protein [Archaeoglobus fulgidus], score 197, E-value 1.00E-49.
 
      0.483
ArtM
ABC-type amino acid transport system, permease component; Best Blastp hit = gi|13701651|dbj|BAB42944.1| '(AP003135) ORFID:SA1675; hypothetical protein, similar to glutamine-binding periplasmic protein [Staphylococcus aureus]' gi|13876171|dbj|BAB46777.1| (AP003363) amino-acid ABC transporter permease protein homolog [Staphylococcus aureus], score 214, E-value 6.00E-55.
    0.473
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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