STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NrfG2TPR-repeat-containing proteins; Best Blastp hit = gi|473955|dbj|BAA06145.1| (D29674) DNA-binding protein [Lactobacillus sp.] gi|1094071|prf||2105286A transcriptional activator [Lactobacillus sp.], score 80.9, E-value 3.00E-14. (428 aa)    
Predicted Functional Partners:
NrfG3
TPR-repeat-containing proteins; Best Blastp hit = gi|473955|dbj|BAA06145.1| (D29674) DNA-binding protein [Lactobacillus sp.] gi|1094071|prf||2105286A transcriptional activator [Lactobacillus sp.], score 91.3, E-value 2.00E-17.
  
  
 
0.900
TTE0788
Hypothetical protein.
       0.682
TTE0927
Hypothetical protein.
   
 
 0.515
NlpD4
Membrane proteins related to metalloendopeptidases; Best Blastp hit = gi|11350176|pir||E83093 hypothetical protein PA4404 [imported] - Pseudomonas aeruginosa (strain PAO1) gi|6715619|gb|AAF26458.1| (U19797) hypothetical protein [Pseudomonas aeruginosa] gi|9950636|gb|AAG07792.1|AE004856_3 (AE004856) hypothetical protein [Pseudomonas aeruginosa], score 123, E-value 5.00E-27.
   
 
 0.515
TTE0659
Conserved hypothetical protein; Best Blastp hit = gi|13442978|gb|AAK26246.1| (AF330049) D-glucuronyl C5-epimerase [Mus musculus], score 96.3, E-value 5.00E-19.
  
     0.483
PgpB
Membrane-associated phospholipid phosphatase; Best Blastp hit = gi|10956338|ref|NP_052787.1| pXO1-91 [Bacillus anthracis] gi|7474332|pir||C59102 hypothetical protein pXO1-91 - Bacillus anthracis virulence plasmid pXO1 gi|4894307|gb|AAD32395.1|AAD32395 (AF065404) pXO1-91 [Bacillus anthracis], score 139, E-value 5.00E-32.
  
   
 0.422
MhpC3
Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); Best Blastp hit = gi|13815563|gb|AAK42427.1| (AE006830) Conserved hypothetical protein [Sulfolobus solfataricus], score 101, E-value 6.00E-21.
 
    0.407
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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