STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTE1066Predicted metal-dependent hydrolase with the TIM-barrel fold; Best Blastp hit = gi|7518994|pir||E71055 hypothetical protein PH1139 - Pyrococcus horikoshii gi|3257556|dbj|BAA30239.1| (AP000005) 494aa long hypothetical protein [Pyrococcus horikoshii], score 382, E-value 1.00E-105. (534 aa)    
Predicted Functional Partners:
Dap2
Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; Best Blastp hit = gi|7518732|pir||F71174 hypothetical protein PH0594 - Pyrococcus horikoshii gi|3257000|dbj|BAA29683.1| (AP000002) 622aa long hypothetical protein [Pyrococcus horikoshii], score 837, E-value 0.
 
     0.426
DmpA
L-aminopeptidase/D-esterase; Best Blastp hit = gi|7520999|pir||D71227 probable D-aminopeptidase - Pyrococcus horikoshii gi|3256464|dbj|BAA29147.1| (AP000001) 361aa long hypothetical D-aminopeptidase [Pyrococcus horikoshii], score 384, E-value 1.00E-106.
  
     0.413
AbgB
Metal-dependent amidase/aminoacylase/carboxypeptidase; Best Blastp hit = gi|7448710|pir||G71097 probable amidohydrolase - Pyrococcus horikoshii gi|3257458|dbj|BAA30141.1| (AP000004) 387aa long hypothetical amidohydrolase [Pyrococcus horikoshii], score 282, E-value 5.00E-75.
 
     0.405
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.