STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTE1147Hypothetical protein. (71 aa)    
Predicted Functional Partners:
PspE
Rhodanese-related sulfurtransferases; Best Blastp hit = gi|7476305|pir||E70526 hypothetical protein Rv0324 - Mycobacterium tuberculosis (strain H37RV) gi|2193945|emb|CAB09589.1| (Z96800) hypothetical protein Rv0324 [Mycobacterium tuberculosis], score 59.3, E-value 1.00E-08.
       0.645
TTE1149
Predicted Fe-S oxidoreductases; Best Blastp hit = gi|11499591|ref|NP_070833.1| heme biosynthesis protein (nirJ-2) [Archaeoglobus fulgidus] gi|7483317|pir||H69500 heme biosynthesis protein (nirJ-2) homolog - Archaeoglobus fulgidus gi|2648528|gb|AAB89245.1| (AE000964) heme biosynthesis protein (nirJ-2) [Archaeoglobus fulgidus], score 144, E-value 2.00E-33.
       0.645
ProP5
Permeases of the major facilitator superfamily; Best Blastp hit = gi|11356537|pir||T45464 tetracycline resistance protein [imported] - Clostridium perfringens gi|1845540|dbj|BAA19230.1| (AB001076) tetracycline resistance protein [Clostridium perfringens], score 57.4, E-value 3.00E-07.
       0.645
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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