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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTE1237Hypothetical protein. (127 aa)    
Predicted Functional Partners:
Sbm3
Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding); Best Blastp hit = gi|3928904|gb|AAC79717.1| '(AF104259) D-lysine 5,6-aminomutase alpha subunit [Clostridium sticklandii]', score 127, E-value 4.00E-28.
 
 
 0.999
TTE1234
Conserved hypothetical protein; Best Blastp hit = gi|11498242|ref|NP_069468.1| hypothetical protein [Archaeoglobus fulgidus] gi|7483459|pir||B69329 hypothetical protein AF0634 - Archaeoglobus fulgidus gi|2649984|gb|AAB90605.1| (AE001060) A. fulgidus predicted coding region AF0634 [Archaeoglobus fulgidus], score 176, E-value 4.00E-43.
 
  
  0.996
TTE1235
Hypothetical protein.
 
     0.963
ThrC
Threonine synthase; Best Blastp hit = gi|13701127|dbj|BAB42422.1| (AP003133) threonine synthase [Staphylococcus aureus] gi|13875642|dbj|BAB45247.1| (AP003362) threonine synthase [Staphylococcus aureus], score 90.1, E-value 5.00E-17.
 
     0.963
TTE1239
Methylaspartate mutase; Best Blastp hit = gi|2127337|pir||I40661 mutL protein - Clostridium cochlearium gi|580977|emb|CAA56922.1| (X80997) methylaspartate mutase [Clostridium cochlearium], score 266, E-value 3.00E-70.
 
     0.963
TTE0727
D-lysine 5,6-aminomutase beta subunit; Best Blastp hit = gi|3928905|gb|AAC79718.1| '(AF104259) D-lysine 5,6-aminomutase beta subunit [Clostridium sticklandii]', score 348, E-value 6.00E-95.
 
 
   0.677
MetH
Methionine synthase I, cobalamin-binding domain protein.
 
 
   0.612
TrxA2
Thiol-disulfide isomerase and thioredoxins; Best Blastp hit = gi|135761|sp|P06544|THI1_ANASO THIOREDOXIN 1 (TRX-1) (THIOREDOXIN M) gi|2117427|pir||I39624 thioredoxin - Anabaena sp gi|7427614|pir||TXAI thioredoxin 1 - Anabaena sp gi|142118|gb|AAA22049.1| (M14736) thioredoxin [Anabaena sp.], score 124, E-value 8.00E-28.
       0.431
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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