STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTE1283Best Blastp hit = gi|730774|sp|Q01367|S3AA_BACSU STAGE III SPORULATION PROTEIN AA gi|98386|pir||S16622 stage III sporulation protein spoIIIAA - Bacillus subtilis gi|581722|emb|CAA43959.1| (X61962) SpoIIIAA protein [Bacillus subtilis] gi|1000359|gb|AAA76720.1| (U35252) SpoIIIAA [Bacillus subtilis] gi|1303904|dbj|BAA12560.1| (D84432) SpoIIIAA [Bacillus subtilis] gi|2634877|emb|CAB14374.1| (Z99116) spoIIIAA [Bacillus subtilis], score 257, E-value 2.00E-67. (330 aa)    
Predicted Functional Partners:
TTE1284
Best Blastp hit = gi|1710821|sp|Q01368|S3AB_BACSU STAGE III SPORULATION PROTEIN AB gi|7475863|pir||E69711 stage III sporulation protein spoIIIAB - Bacillus subtilis gi|1000360|gb|AAA76721.1| (U35252) SpoIIIAB [Bacillus subtilis] gi|1303905|dbj|BAA12561.1| (D84432) SpoIIIAB [Bacillus subtilis] gi|2634876|emb|CAB14373.1| (Z99116) spoIIIAB [Bacillus subtilis], score 100, E-value 9.00E-21.
 
  
 0.999
TTE1289
Best Blastp hit = gi|1710826|sp|P49784|S3AG_BACSU STAGE III SPORULATION PROTEIN AG gi|1000365|gb|AAA76726.1| (U35252) SpoIIIAG [Bacillus subtilis], score 79.3, E-value 3.00E-14.
 
  
 0.990
TTE1290
Best Blastp hit = gi|1710827|sp|P49785|S3AH_BACSU STAGE III SPORULATION PROTEIN AH gi|1000366|gb|AAA76727.1| (U35252) SpoIIIAH [Bacillus subtilis], score 60.1, E-value 2.00E-08.
 
  
 0.987
TTE1287
Best Blastp hit = gi|10175414|dbj|BAB06512.1| (AP001516) mutants block sporulation after engulfment [Bacillus halodurans], score 233, E-value 4.00E-60.
 
  
 0.985
TTE1285
Hypothetical protein.
 
  
 0.984
TTE1286
Best Blastp hit = gi|10175415|dbj|BAB06513.1| (AP001516) mutants block sporulation after engulfment [Bacillus halodurans], score 84.3, E-value 5.00E-16.
 
  
 0.980
TTE1288
Best Blastp hit = gi|1710825|sp|P49783|S3AF_BACSU STAGE III SPORULATION PROTEIN AF gi|7475647|pir||A69712 mutants block sporulation after engulfment spoIIIAF - Bacillus subtilis gi|1000364|gb|AAA76725.1| (U35252) SpoIIIAF [Bacillus subtilis] gi|1303909|dbj|BAA12565.1| (D84432) SpoIIIAF [Bacillus subtilis] gi|2634872|emb|CAB14369.1| (Z99116) spoIIIAF [Bacillus subtilis], score 65.1, E-value 5.00E-10.
 
  
 0.933
TTE1616
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.907
TTE0170
Transcription regulator of sigma-E/sigma-K-dependent gene spoIIID; Best Blastp hit = gi|134766|sp|P15281|SP3D_BACSU STAGE III SPORULATION PROTEIN D (14 KD TRANSCRIPTION FACTOR) gi|98493|pir||A33472 transcription regulator of sigma-E/sigma-K-dependent gene spoIIID - Bacillus subtilis gi|580763|emb|CAA33541.1| (X15520) transcription factor (AA 1-93) [Bacillus subtilis] gi|580931|emb|CAA36295.1| (X52076) spoIIID protein (AA 1-93) [Bacillus subtilis] gi|1684653|emb|CAB05384.1| (Z82987) SpoIIID [Bacillus subtilis] gi|2636167|emb|CAB15659.1| (Z99122) transcriptional regulator [Bacillus subti [...]
  
   
 0.866
TTE2552
pro-sigma-E processing factor spoIIR; Best Blastp hit = gi|730770|sp|P39151|SP2R_BACSU STAGE II SPORULATION PROTEIN R gi|2127223|pir||I40474 pro-sigma-E processing factor spoIIR - Bacillus subtilis gi|556879|emb|CAA86103.1| (Z38002) Unknown [Bacillus subtilis] gi|2636222|emb|CAB15714.1| '(Z99122) alternate gene name: ipc-27d, csfX [Bacillus subtilis]' gi|1095417|prf||2108403B spoIIR gene [Bacillus subtilis], score 120, E-value 1.00E-26.
  
  
 0.860
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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