STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WcaA2Glycosyltransferases involved in cell wall biogenesis; Best Blastp hit = gi|10175390|dbj|BAB06488.1| (AP001516) dolichyl-phosphate mannose synthase [Bacillus halodurans], score 151, E-value 6.00E-36. (229 aa)    
Predicted Functional Partners:
TTE1305
Conserved hypothetical protein; Best Blastp hit = gi|2145865|pir||S72965 hypothetical protein - Mycobacterium leprae gi|467143|gb|AAA50907.1| (U00021) No definition line found [Mycobacterium leprae] gi|2065222|emb|CAB08285.1| (Z95117) hypothetical protein MLC1351.11c [Mycobacterium leprae], score 249, E-value 3.00E-65.
 
     0.962
TTE1306
Hypothetical protein.
 
     0.960
TTE1308
Hypothetical protein.
 
  
 0.958
TTE1309
Conserved hypothetical protein; Best Blastp hit = gi|10174140|dbj|BAB05242.1| (AP001512) BH1523; unknown [Bacillus halodurans], score 224, E-value 1.00E-57.
 
     0.956
TTE0101
Conserved hypothetical protein; Best Blastp hit = gi|10173162|dbj|BAB04268.1| (AP001508) BH0549; unknown [Bacillus halodurans], score 173, E-value 6.00E-42.
    0.784
TTE0948
Conserved hypothetical protein; Best Blastp hit = gi|10173162|dbj|BAB04268.1| (AP001508) BH0549; unknown [Bacillus halodurans], score 176, E-value 7.00E-43.
    0.784
CheY7
CheY-like receiver domains; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
       0.589
TTE1621
Hypothetical protein.
  
     0.538
TTE1128
Hypothetical protein.
  
     0.519
Gcd1.2
Nucleoside-diphosphate-sugar pyrophosphorylase; Involved in lipopolysaccharide biosynthesis; translation initiation factor eIF2B subunits; Best Blastp hit = gi|7451542|pir||S76785 hypothetical protein - Synechocystis sp. (strain PCC 6803) gi|1653786|dbj|BAA18697.1| (D90916) mannose-1-phosphate guanyltransferase [Synechocystis sp.], score 411, E-value 1.00E-113.
  
 
 0.519
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.