Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| InfB | NusA | TTE1393 | TTE1396 | Translation initiation factor 2 (GTPase); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Transcription terminator; Participates in both transcription termination and antitermination. | 0.997 |
| InfB | RbfA | TTE1393 | TTE1392 | Translation initiation factor 2 (GTPase); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.991 |
| InfB | RibF | TTE1393 | TTE1389 | Translation initiation factor 2 (GTPase); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | FAD synthase; Best Blastp hit = gi|7444639|pir||D70313 riboflavin kinase - Aquifex aeolicus gi|2982868|gb|AAC06488.1| (AE000675) riboflavin kinase [Aquifex aeolicus], score 193, E-value 3.00E-48; Belongs to the ribF family. | 0.864 |
| InfB | RpsG | TTE1393 | TTE2297 | Translation initiation factor 2 (GTPase); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.975 |
| InfB | RpsL | TTE1393 | TTE2298 | Translation initiation factor 2 (GTPase); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.941 |
| InfB | RpsO | TTE1393 | TTE1388 | Translation initiation factor 2 (GTPase); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Ribosomal protein S15P/S13E; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.981 |
| InfB | TTE1391 | TTE1393 | TTE1391 | Translation initiation factor 2 (GTPase); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Exopolyphosphatase-related proteins; Best Blastp hit = gi|7445472|pir||F70440 conserved hypothetical protein aq_1630 - Aquifex aeolicus gi|2983973|gb|AAC07520.1| (AE000748) hypothetical protein [Aquifex aeolicus], score 186, E-value 3.00E-46. | 0.910 |
| InfB | TTE1395 | TTE1393 | TTE1395 | Translation initiation factor 2 (GTPase); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Predicted nucleic-acid-binding protein implicated in transcription termination; Best Blastp hit = gi|10175035|dbj|BAB06134.1| (AP001515) BH2415; unknown conserved protein [Bacillus halodurans], score 80.5, E-value 4.00E-15. | 0.977 |
| InfB | TruB | TTE1393 | TTE1390 | Translation initiation factor 2 (GTPase); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.998 |
| InfB | rimP | TTE1393 | TTE1397 | Translation initiation factor 2 (GTPase); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Conserved hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.968 |
| NusA | InfB | TTE1396 | TTE1393 | Transcription terminator; Participates in both transcription termination and antitermination. | Translation initiation factor 2 (GTPase); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.997 |
| NusA | RbfA | TTE1396 | TTE1392 | Transcription terminator; Participates in both transcription termination and antitermination. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.916 |
| NusA | RibF | TTE1396 | TTE1389 | Transcription terminator; Participates in both transcription termination and antitermination. | FAD synthase; Best Blastp hit = gi|7444639|pir||D70313 riboflavin kinase - Aquifex aeolicus gi|2982868|gb|AAC06488.1| (AE000675) riboflavin kinase [Aquifex aeolicus], score 193, E-value 3.00E-48; Belongs to the ribF family. | 0.884 |
| NusA | RpsG | TTE1396 | TTE2297 | Transcription terminator; Participates in both transcription termination and antitermination. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.978 |
| NusA | RpsL | TTE1396 | TTE2298 | Transcription terminator; Participates in both transcription termination and antitermination. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.964 |
| NusA | RpsO | TTE1396 | TTE1388 | Transcription terminator; Participates in both transcription termination and antitermination. | Ribosomal protein S15P/S13E; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.908 |
| NusA | TTE1391 | TTE1396 | TTE1391 | Transcription terminator; Participates in both transcription termination and antitermination. | Exopolyphosphatase-related proteins; Best Blastp hit = gi|7445472|pir||F70440 conserved hypothetical protein aq_1630 - Aquifex aeolicus gi|2983973|gb|AAC07520.1| (AE000748) hypothetical protein [Aquifex aeolicus], score 186, E-value 3.00E-46. | 0.859 |
| NusA | TTE1395 | TTE1396 | TTE1395 | Transcription terminator; Participates in both transcription termination and antitermination. | Predicted nucleic-acid-binding protein implicated in transcription termination; Best Blastp hit = gi|10175035|dbj|BAB06134.1| (AP001515) BH2415; unknown conserved protein [Bacillus halodurans], score 80.5, E-value 4.00E-15. | 0.983 |
| NusA | TruB | TTE1396 | TTE1390 | Transcription terminator; Participates in both transcription termination and antitermination. | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.970 |
| NusA | rimP | TTE1396 | TTE1397 | Transcription terminator; Participates in both transcription termination and antitermination. | Conserved hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.987 |
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