STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTE1411Hypothetical protein. (93 aa)    
Predicted Functional Partners:
TTE1412
Conserved hypothetical protein; Best Blastp hit = gi|7462139|pir||B72339 conserved hypothetical protein - Thermotoga maritima (strain MSB8) gi|4981260|gb|AAD35816.1|AE001744_6 (AE001744) conserved hypothetical protein [Thermotoga maritima], score 201, E-value 1.00E-50.
       0.774
RpsB
Ribosomal protein S2; Best Blastp hit = gi|10175047|dbj|BAB06146.1| (AP001515) 30S ribosomal protein S2 [Bacillus halodurans], score 367, E-value 1.00E-100; Belongs to the universal ribosomal protein uS2 family.
       0.773
TTE1410
Hypothetical protein.
       0.773
FliA3
DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.773
CheD
Chemotaxis protein; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
       0.762
CheC
Chemotaxis protein CheC, inhibitor of MCP methylation; Best Blastp hit = gi|10175054|dbj|BAB06153.1| (AP001515) inhibition of CheR-mediated methylation of MCPs [Bacillus halodurans], score 166, E-value 3.00E-40.
       0.762
CheW4
Chemotaxis signal transduction protein; Best Blastp hit = gi|10175591|dbj|BAB06688.1| (AP001517) modulation of CheA activity in response to attractants (chemotaxis protein) [Bacillus halodurans], score 112, E-value 3.00E-24.
       0.762
CheA2
Chemotaxis protein histidine kinase and related kinases; Best Blastp hit = gi|10175592|dbj|BAB06689.1| (AP001517) two-component sensor histidine kinase involved in chemotaxis [Bacillus halodurans], score 542, E-value 1.00E-153.
       0.762
CheB2
Best Blastp hit = gi|11262668|pir||H82122 protein-glutamate methylesterase CheB VC2062 [imported] - Vibrio cholerae (group O1 strain N16961) gi|9656608|gb|AAF95208.1| (AE004280) protein-glutamate methylesterase CheB [Vibrio cholerae], score 155, E-value 3.00E-37.
       0.762
TTE1419
Conserved hypothetical protein; Best Blastp hit = gi|7460111|pir||H72318 hypothetical protein TM0905 - Thermotoga maritima (strain MSB8) gi|4981441|gb|AAD35986.1|AE001755_9 (AE001755) hypothetical protein [Thermotoga maritima], score 79, E-value 5.00E-14.
       0.762
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.